RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 APOBEC2Q9Y235 224 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 TYW5A2RUC4 315 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 CES2O00748 559 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 C2CD2LO14523 706 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 CDH16O75309 829 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM107AO95990 144 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 YWHAHQ04917 246 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 STILQ15468 1287 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 IL31Q6EBC2 164 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 GTF3C2Q8WUA4 911 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM161BQ96MY7 647 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 UNKQ9C0B0 810 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 UBQLN1Q9UMX0 589 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 ARL2BPQ9Y2Y0 163 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 NFASCO94856 1347 aa9.31□□□□□ -0.92
PDLIM5-222ENST00000615540 CLGNO14967 610 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM200BP0CF97 657 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CYP2F1P24903 491 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CPA2P48052 419 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 TAS2R40P59535 323 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 EDEM1Q92611 657 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 LENG9Q96B70 501 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 LRGUKQ96M69 825 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 MANSC1Q9H8J5 431 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PAK5Q9P286 719 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ANGPTL3Q9Y5C1 460 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 TCRBV7S2A1N4TA0A589 114 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 E5RJQ4 531 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 OPLAHO14841 1288 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 MAFO75444 373 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PDHA1P08559 390 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 KCNA2P16389 499 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ATXN3P54252 364 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ART3Q13508 389 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 BMPR2Q13873 1038 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CHI3L2Q15782 390 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FASTKD1Q53R41 847 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ITPRIPL1Q6GPH6 555 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ABHD15Q6UXT9 468 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 TRPM8Q7Z2W7 1104 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 TLK2Q86UE8 772 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CPNE8Q86YQ8 564 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 KIAA0319LQ8IZA0 1049 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ARMC2Q8NEN0 867 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PPHLN1Q8NEY8 458 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ERP27Q96DN0 273 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 SERPINB12Q96P63 405 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CAMKK2Q96RR4 588 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 EPAS1Q99814 870 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 SPON2Q9BUD6 331 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ROPN1BQ9BZX4 212 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 VCX3BQ9H321 246 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ROPN1Q9HAT0 212 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 UBP1Q9NZI7 540 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ITGA11Q9UKX5 1188 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 UBA6A0AVT1 1052 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FOXO6A8MYZ6 492 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FOXD4Q12950 439 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ACVR2BQ13705 512 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 RBBP7Q16576 425 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 MTHFD1LQ6UB35 978 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM183BPQ6ZVS7 135 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 LENG1Q96BZ8 264 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 APOL2Q9BQE5 337 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 SIX2Q9NPC8 291 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 AP4E1Q9UPM8 1137 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PRG3Q9Y2Y8 225 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 LSM8O95777 96 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 MCF2P10911 925 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 C1QBPQ07021 282 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ADIGQ0VDE8 80 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 MMRN1Q13201 1228 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PABPC5Q96DU9 382 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM167BQ9BTA0 163 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 CD248Q9HCU0 757 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 HNRNPH3P31942 346 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 RGS2P41220 211 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 KLC3Q6P597 504 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 HES6Q96HZ4 224 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 SLITRK1Q96PX8 696 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PAFAH2Q99487 392 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 PHTF1Q9UMS5 762 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 BTAF1O14981 1849 aa9.3□□□□□ -0.92
PDLIM5-222ENST00000615540 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ACO1P21399 889 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 RPL7AP62424 266 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 MGAT5BQ3V5L5 792 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 SLC40A1Q9NP59 571 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 DDX20Q9UHI6 824 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 BARX2Q9UMQ3 279 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 IGF2BP3O00425 579 aaKnown RBP eCLIP9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ACKR2O00590 384 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 MAP3K7O43318 606 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 PLA2G6O60733 806 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 ACADSBP45954 432 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 STX1BP61266 288 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 CCNG2Q16589 344 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 C1orf146Q5VVC0 180 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 C12orf29Q8N999 325 aa9.29□□□□□ -0.92
PDLIM5-222ENST00000615540 MFSD14AQ96MC6 490 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms