RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IPO13O94829 963 aaKnown RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 EYA4O95677 639 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 ABHD16AO95870 558 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 PGK2P07205 417 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 SP100P23497 879 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 PRDX5P30044 214 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 RFC2P35250 354 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 SHC2P98077 582 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 GCKRQ14397 625 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 DGKDQ16760 1214 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 SHROOM1Q2M3G4 852 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 MTERF2Q49AM1 385 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 CAVIN4Q5BKX8 364 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 CATSPERGQ6ZRH7 1159 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 RTN4RL1Q86UN2 441 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 ELOA2Q8IYF1 753 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 SUMF1Q8NBK3 374 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 TET1Q8NFU7 2136 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 OR5AN1Q8NGI8 311 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 E2F7Q96AV8 911 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 FOXRED1Q96CU9 486 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 PGBD4Q96DM1 585 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 MSLNLQ96KJ4 702 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 DHRS4Q9BTZ2 278 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 TRMT13Q9NUP7 481 aaKnown RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 BABAM1Q9NWV8 329 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 GEMIN8Q9NWZ8 242 aaKnown RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 COQ6Q9Y2Z9 468 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 MSRB2Q9Y3D2 182 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 USP15Q9Y4E8 981 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 COL11A1P12107 1806 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 CNOT1A5YKK6 2376 aaKnown RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 FRYLO94915 3013 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 GRIN2DO15399 1336 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 CLSPNQ9HAW4 1339 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 TEP1Q99973 2627 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 EIF4E1BA6NMX2 242 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ZAR1LA6NP61 321 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 MASP2O00187 686 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ADCY6O43306 1168 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 KRT38O76015 456 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 DDX58O95786 925 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ASNSP08243 561 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 VSIG10L2P0DP72 767 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 FCER1AP12319 257 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 AOC1P19801 751 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PSMC6P62333 389 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 NEXNQ0ZGT2 675 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 RASGRF1Q13972 1273 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PLS1Q14651 629 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 N4BP2L1Q5TBK1 243 aaPredicted RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 KCNV1Q6PIU1 500 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 UBALD2Q8IYN6 164 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ABRAQ8N0Z2 381 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ZGPATQ8N5A5 531 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PLA2G15Q8NCC3 412 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 SMRP1Q8NCR6 262 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 MDGA1Q8NFP4 955 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 ARL8AQ96BM9 186 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 CCDC136Q96JN2 1154 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 EXOC2Q96KP1 924 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 FEZ1Q99689 392 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PCGF6Q9BYE7 350 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 SPATC1LQ9H0A9 340 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 UPF3AQ9H1J1 476 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PFDN2Q9UHV9 154 aa5.21□□□□□ -1.58
LINC00540-201ENST00000611481 LAS1LQ9Y4W2 734 aaKnown RBP5.21□□□□□ -1.58
LINC00540-201ENST00000611481 PTPN13Q12923 2485 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 GRID2IPA4D2P6 1211 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SLC30A4O14863 429 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 CTAGE5O15320 804 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 B3GALT2O43825 422 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 EFCAB14O75071 495 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 CABYRO75952 493 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 TOX4O94842 621 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 JUNP05412 331 aaKnown RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 HOXB7P09629 217 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 IQCF3P0C7M6 154 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 VCAM1P19320 739 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 ANTXR2P58335 489 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 C21orf58P58505 322 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 AMPD3Q01432 767 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 ROM1Q03395 351 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 C1QL3Q5VWW1 255 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 NAIF1Q69YI7 327 aaPredicted RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SYCE2Q6PIF2 218 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 LRRC55Q6ZSA7 311 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 OVCH1Q7RTY7 1134 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 CLEC14AQ86T13 490 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 MB21D1Q8N884 522 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 WDR66Q8TBY9 1149 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 STAG1Q8WVM7 1258 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 MAGEB10Q96LZ2 347 aaPredicted RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 ZNF512Q96ME7 567 aaPredicted RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SIL1Q9H173 461 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 ALDH8A1Q9H2A2 487 aaPredicted RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 TOR3AQ9H497 397 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 MROH8Q9H579 483 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 G3BP2Q9UN86 482 aaKnown RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SORCS3Q9UPU3 1222 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms