RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 YWHAQP27348 245 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 ADORA2BP29275 332 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 IFRD2Q12894 506 aaPredicted RBP20.52■□□□□ 0.88
UPF1-212ENST00000601689 ORC1Q13415 861 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 HFE2Q6ZVN8 426 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 MON1AQ86VX9 555 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 CMTM8Q8IZV2 173 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 FUKQ8N0W3 1084 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 CELF5Q8N6W0 485 aaKnown RBP20.52■□□□□ 0.88
UPF1-212ENST00000601689 HNRNPABQ99729 332 aaKnown RBP20.52■□□□□ 0.88
UPF1-212ENST00000601689 RPP25Q9BUL9 199 aaKnown RBP20.52■□□□□ 0.88
UPF1-212ENST00000601689 TRPC7Q9HCX4 862 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 C11orf16Q9NQ32 467 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 ABL1P00519 1130 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 USP17L7P0C7H9 530 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 CCDC130P13994 396 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 SIX5Q8N196 739 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 C12orf29Q8N999 325 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 EHBP1Q8NDI1 1231 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 CSGALNACT1Q8TDX6 532 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 OVCA2Q8WZ82 227 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 DNASE1L2Q92874 299 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 TTLL2Q9BWV7 592 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 SMOC2Q9H3U7 446 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 HMGXB4Q9UGU5 601 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 KIAA1257Q9ULG3 409 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 CA14Q9ULX7 337 aa20.51■□□□□ 0.87
UPF1-212ENST00000601689 LRRN2O75325 713 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 CKMP06732 381 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 GDI1P31150 447 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 VIPR2P41587 438 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 MAP3K7CLP57077 242 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 PLCB2Q00722 1185 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 PRKCQQ04759 706 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 STX1AQ16623 288 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 MAN2A1Q16706 1144 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 ARHGAP29Q52LW3 1261 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 STXBP5Q5T5C0 1151 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 CC2D1AQ6P1N0 951 aaPredicted RBP20.5■□□□□ 0.87
UPF1-212ENST00000601689 GBP6Q6ZN66 633 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 RBM43Q6ZSC3 357 aaKnown RBP20.5■□□□□ 0.87
UPF1-212ENST00000601689 ANKRD20A12PQ8NF67 263 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 FLCNQ8NFG4 579 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 BPIFB1Q8TDL5 484 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 FBXO32Q969P5 355 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 KCNK16Q96T55 309 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 PRRX2Q99811 253 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 SLC46A2Q9BY10 475 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 NAT10Q9H0A0 1025 aaKnown RBP20.5■□□□□ 0.87
UPF1-212ENST00000601689 ARHGEF3Q9NR81 526 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 TDP1Q9NUW8 608 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 GCNT4Q9P109 453 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 HESX1Q9UBX0 185 aa20.5■□□□□ 0.87
UPF1-212ENST00000601689 PES1O00541 588 aaKnown RBP20.49■□□□□ 0.87
UPF1-212ENST00000601689 CD19P15391 556 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 HDCP19113 662 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 FCARP24071 287 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 GCNT1Q02742 428 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 TAF10Q12962 218 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 GRM2Q14416 872 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 SGO2Q562F6 1265 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 TXNDC8Q6A555 127 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 VITQ6UXI7 678 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 ENOSF1Q7L5Y1 443 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 ENOX1Q8TC92 643 aaKnown RBP20.49■□□□□ 0.87
UPF1-212ENST00000601689 JAKMIP2Q96AA8 810 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 TWNKQ96RR1 684 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 CSNK1G1Q9HCP0 422 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 PNPLA8Q9NP80 782 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 PCDHB4Q9Y5E5 795 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 OBSL1O75147 1896 aa20.49■□□□□ 0.87
UPF1-212ENST00000601689 GTPBP10A4D1E9 387 aaKnown RBP20.48■□□□□ 0.87
UPF1-212ENST00000601689 CHADO15335 359 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 NPR3P17342 541 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 CLCN5P51795 746 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 SLC5A3P53794 718 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 MFAP3P55082 362 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 EXOC3L4Q17RC7 722 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 SLC44A4Q53GD3 710 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 C1orf228Q6PIY5 440 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 TMEM270Q6UE05 265 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 PAQR9Q6ZVX9 377 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 WHAMMQ8TF30 809 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 ARID3AQ99856 593 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 DUSP16Q9BY84 665 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 PLA2G2FQ9BZM2 168 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 TRPV5Q9NQA5 729 aa20.48■□□□□ 0.87
UPF1-212ENST00000601689 MRPS17Q9Y2R5 130 aaKnown RBP20.48■□□□□ 0.87
UPF1-212ENST00000601689 ANAPC1Q9H1A4 1944 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 LETM1O95202 739 aaPredicted RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 PAEPP09466 180 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 VDRP11473 427 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 EEF1GP26641 437 aaKnown RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 RAD23BP54727 409 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 ZNF268Q14587 947 aaPredicted RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 STILQ15468 1287 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 MLF2Q15773 248 aaPredicted RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 PPP1R26Q5T8A7 1209 aaPredicted RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 ARHGAP17Q68EM7 881 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 ASTLQ6HA08 431 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms