RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SYT15Q9BQS2 421 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 TTLL2Q9BWV7 592 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 TMEM9BQ9NQ34 198 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CRTAC1Q9NQ79 661 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CDH9Q9ULB4 789 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 ZMIZ1Q9ULJ6 1067 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 IGF2RP11717 2491 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 FAM208BQ5VWN6 2430 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 ANK1P16157 1881 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 ZNF840PA6NDX5 716 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 TMEM191BP0C7N4 346 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 CEACAM1P13688 526 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 SPINK2P20155 84 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 BDNFP23560 247 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 P2RY2P41231 377 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 PDE6CP51160 858 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 SLC7A9P82251 487 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 MRPS21P82921 87 aaKnown RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 FOXC1Q12948 553 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 LARP1BQ659C4 914 aaKnown RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 LMBRD2Q68DH5 695 aaPredicted RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 C4orf50Q6ZRC1 276 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 DENND5BQ6ZUT9 1274 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 ADGRG2Q8IZP9 1017 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 PCED1BQ96HM7 432 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 ADAM33Q9BZ11 813 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 RNF38Q9H0F5 515 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 PCIF1Q9H4Z3 704 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 INTS13Q9NVM9 706 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 TRPM5Q9NZQ8 1165 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 MAGEC2Q9UBF1 373 aaPredicted RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 EVLQ9UI08 416 aaPredicted RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 FBXO2Q9UK22 296 aaPredicted RBP10.66□□□□□ -0.7
LIG1-209ENST00000596104 SMC3Q9UQE7 1217 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 NME7Q9Y5B8 376 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 PCDHB13Q9Y5F0 798 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 CLIC4Q9Y696 253 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 EML5Q05BV3 1969 aa10.66□□□□□ -0.7
LIG1-209ENST00000596104 SGK1O00141 431 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 TULP1O00294 542 aaPredicted RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 OAS1P00973 400 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 IDEP14735 1019 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 WARSP23381 471 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 GRIK1P39086 918 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 EIF2DP41214 584 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 SLC6A11P48066 632 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 DHPSP49366 369 aaPredicted RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 NOP14P78316 857 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 MYO1EQ12965 1108 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 ALCAMQ13740 583 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 DHCR24Q15392 516 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 MAPRE1Q15691 268 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 RRAGBQ5VZM2 374 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 SV2BQ7L1I2 683 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 FILIP1Q7Z7B0 1213 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 C12orf40Q86WS4 652 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 SYCP3Q8IZU3 236 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 GPD1LQ8N335 351 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 ALLCQ8N6M5 410 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 IL17RCQ8NAC3 791 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 RLN3Q8WXF3 142 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 PIGKQ92643 395 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 GATA6Q92908 595 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 HPDLQ96IR7 371 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 ANKRD36BP1Q96IX9 119 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 FNBP1Q96RU3 617 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 TMEM30AQ9NV96 361 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 CCDC39Q9UFE4 941 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 SRPRBQ9Y5M8 271 aaKnown RBP10.65□□□□□ -0.7
LIG1-209ENST00000596104 CPQQ9Y646 472 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 OBSL1O75147 1896 aa10.65□□□□□ -0.7
LIG1-209ENST00000596104 DENND4CQ5VZ89 1909 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 LAMA1P25391 3075 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 ATG2BQ96BY7 2078 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 A0A087X0B3 334 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 A0A0A0MRY4 1105 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 F8VP50 259 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 TNFRSF10BO14763 440 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 SCAMP3O14828 347 aaKnown RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 KIAA0391O15091 583 aaKnown RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 ALDH1A2O94788 518 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 PRPF6O94906 941 aaKnown RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 PDGFRBP09619 1106 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 PTGER3P43115 390 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 KIR2DL1P43626 348 aaPredicted RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 PPP3CCP48454 512 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 CACNA2D1P54289 1103 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 MAP7D1Q3KQU3 841 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 HSF5Q4G112 596 aaPredicted RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 TRIM61Q5EBN2 209 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 EMC10Q5UCC4 262 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 RHBDF2Q6PJF5 856 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 LPCAT2Q7L5N7 544 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 CBWD2Q8IUF1 395 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 PHTF2Q8N3S3 785 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 FRMD1Q8N878 549 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 TXNDC5Q8NBS9 432 aaKnown RBP10.64□□□□□ -0.71
LIG1-209ENST00000596104 GLIS3Q8NEA6 775 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 DEFB124Q8NES8 71 aa10.64□□□□□ -0.71
LIG1-209ENST00000596104 MYCBPAPQ8TBZ2 947 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms