RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 WDR44Q5JSH3 913 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 TXNDC8Q6A555 127 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 TTC39CQ8N584 583 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 CELF5Q8N6W0 485 aaKnown RBP17.22■□□□□ 0.35
TRIM28-206ENST00000595974 MAB21L3Q8N8X9 362 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 PJA1Q8NG27 643 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 BPIFB1Q8TDL5 484 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 NT5C1AQ9BXI3 368 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 CLSTN2Q9H4D0 955 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 DMAP1Q9NPF5 467 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-206ENST00000595974 TMEM30AQ9NV96 361 aa17.22■□□□□ 0.35
TRIM28-206ENST00000595974 KANSL1LA0AUZ9 987 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 ARNTLO00327 626 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 PI15O43692 258 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 LRRN2O75325 713 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 CILPO75339 1184 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 PFKLP17858 780 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 PPP3CCP48454 512 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 USP46P62068 366 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 PLCB2Q00722 1185 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 ORC1Q13415 861 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 ZNF268Q14587 947 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-206ENST00000595974 ARHGAP29Q52LW3 1261 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 TPRG1Q6ZUI0 275 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 PAQR9Q6ZVX9 377 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 CCDC105Q8IYK2 499 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 FUKQ8N0W3 1084 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 FAM122AQ96E09 287 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 GBP4Q96PP9 640 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 HEBP1Q9NRV9 189 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 KRT82Q9NSB4 513 aa17.21■□□□□ 0.35
TRIM28-206ENST00000595974 TRAV19A0A0A6YYK7 116 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 PMM2O15305 246 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 AP1G2O75843 785 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 RTN3O95197 1032 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 GNA14O95837 355 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 CCDC130P13994 396 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 CD58P19256 250 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 FMO5P49326 533 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 PDE6CP51160 858 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 MARSP56192 900 aaKnown RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 STX17P56962 302 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 NUP93Q8N1F7 819 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 SLC2A14Q8TDB8 520 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 USP13Q92995 863 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 MSANTD3Q96H12 275 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 SLITRK1Q96PX8 696 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 TWNKQ96RR1 684 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 OSBPL6Q9BZF3 934 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 FOXQ1Q9C009 403 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 SMG9Q9H0W8 520 aaKnown RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 IRF2BPLQ9H1B7 796 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 TRPC7Q9HCX4 862 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 FAM49BQ9NUQ9 324 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 TDP1Q9NUW8 608 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 THG1LQ9NWX6 298 aaKnown RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 TRPM5Q9NZQ8 1165 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 MRPS17Q9Y2R5 130 aaKnown RBP17.2■□□□□ 0.34
TRIM28-206ENST00000595974 SIT1Q9Y3P8 196 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 CACNA1IQ9P0X4 2223 aa17.2■□□□□ 0.34
TRIM28-206ENST00000595974 MAN2B1O00754 1011 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 FGFR1OPO95684 399 aaKnown RBP17.19■□□□□ 0.34
TRIM28-206ENST00000595974 CKMP06732 381 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 USP17L7P0C7H9 530 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 GLULP15104 373 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 MLLT6P55198 1093 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-206ENST00000595974 TCF15Q12870 199 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 ZNF852Q6ZMS4 543 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 GPIHBP1Q8IV16 184 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 C12orf29Q8N999 325 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 PDZD8Q8NEN9 1154 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 CSGALNACT1Q8TDX6 532 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 WHAMMQ8TF30 809 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 OVCA2Q8WZ82 227 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 IPO9Q96P70 1041 aaKnown RBP17.19■□□□□ 0.34
TRIM28-206ENST00000595974 LRRC3BQ96PB8 259 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 NUP62CLQ9H1M0 184 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 CSNK1G1Q9HCP0 422 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 LTB4R2Q9NPC1 389 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 CISHQ9NSE2 258 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 RWDD2AQ9UIY3 292 aa17.19■□□□□ 0.34
TRIM28-206ENST00000595974 P4HA2O15460 535 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 FAM200BP0CF97 657 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 MAGEA9P43362 315 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 SLC5A3P53794 718 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 NHLH1Q02575 133 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 USP4Q13107 963 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 UBXN2BQ14CS0 331 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 C1orf228Q6PIY5 440 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 TRIM59Q8IWR1 403 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 MLKLQ8NB16 471 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 DTWD2Q8NBA8 298 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 KCNK16Q96T55 309 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 NELL2Q99435 816 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 HNRNPABQ99729 332 aaKnown RBP17.18■□□□□ 0.34
TRIM28-206ENST00000595974 SMOQ99835 787 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 ARID3AQ99856 593 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 LMBRD1Q9NUN5 540 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 COMMD8Q9NX08 183 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 GCNT4Q9P109 453 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms