RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 RALGPS2Q86X27 583 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-203ENST00000593582 MED10Q9BTT4 135 aa16.24■□□□□ 0.19
TRIM28-203ENST00000593582 TTLL2Q9BWV7 592 aa16.24■□□□□ 0.19
TRIM28-203ENST00000593582 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.24■□□□□ 0.191e-7■■■■□ 21.3
TRIM28-203ENST00000593582 GTSE1Q9NYZ3 720 aa16.24■□□□□ 0.19
TRIM28-203ENST00000593582 TRPM5Q9NZQ8 1165 aa16.24■□□□□ 0.19
TRIM28-203ENST00000593582 NUP210Q8TEM1 1887 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-203ENST00000593582 ASPAP45381 313 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 NDST1P52848 882 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 CACNA2D1P54289 1103 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 FKBP3Q00688 224 aaKnown RBP16.23■□□□□ 0.19
TRIM28-203ENST00000593582 LRRC63Q05C16 580 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 TNK2Q07912 1038 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 ITPRIPL2Q3MIP1 535 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 ADSSL1Q8N142 457 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 ZNF687Q8N1G0 1237 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 TTC8Q8TAM2 541 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 CYP2S1Q96SQ9 504 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 CYP3A43Q9HB55 503 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 GKN1Q9NS71 199 aa16.23■□□□□ 0.19
TRIM28-203ENST00000593582 C2orf78A6NCI8 922 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SPECC1L-ADORA2AF8WAN1 911 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 PSMA7O14818 248 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SLC16A3O15427 465 aaKnown RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 GFRA3O60609 400 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 PFKLP17858 780 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 HDCP19113 662 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 CTHP32929 405 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SOX9P48436 509 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 MXI1P50539 228 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 MCCD1P59942 119 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 FZD5Q13467 585 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 ANKRD40Q6AI12 368 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 ZC3H14Q6PJT7 736 aaKnown RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 FAM35AQ86V20 835 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 NUP93Q8N1F7 819 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 CRYBG2Q8N1P7 616 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 ARL14EPQ8N8R7 260 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 TTC16Q8NEE8 873 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 NKD2Q969F2 451 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SMARCD1Q96GM5 515 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SLITRK1Q96PX8 696 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 SLC22A12Q96S37 553 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 FAM83CQ9BQN1 747 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 DNAI2Q9GZS0 605 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 NIF3L1Q9GZT8 377 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 LMAN1LQ9HAT1 526 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 DMAP1Q9NPF5 467 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-203ENST00000593582 TMEM30AQ9NV96 361 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 FBXO4Q9UKT5 387 aa16.22■□□□□ 0.19
TRIM28-203ENST00000593582 TICRRQ7Z2Z1 1910 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 ZFHX2Q9C0A1 2572 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 GADD45BO75293 160 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 AP1G2O75843 785 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 RTN3O95197 1032 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 ABL1P00519 1130 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 SP9P0CG40 484 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 YWHAQP27348 245 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 PPP1R2P41236 205 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 PMS1P54277 932 aaKnown RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 INCA1Q0VD86 236 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 IFRD2Q12894 506 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 TAF10Q12962 218 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 MTAPQ13126 283 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 ORC1Q13415 861 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 RUNX3Q13761 415 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 LRRC32Q14392 662 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 TCERG1LQ5VWI1 586 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 ISM2Q6H9L7 571 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 MAML2Q8IZL2 1156 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 FUKQ8N0W3 1084 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 FBXL13Q8NEE6 735 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 DHTKD1Q96HY7 919 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 KCNK16Q96T55 309 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 IER2Q9BTL4 223 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 CHRDQ9H2X0 955 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 EBF3Q9H4W6 596 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 APOBEC3GQ9HC16 384 aaKnown RBP16.21■□□□□ 0.19
TRIM28-203ENST00000593582 KRT82Q9NSB4 513 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 GCNT4Q9P109 453 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 HMGXB4Q9UGU5 601 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 MAN1B1Q9UKM7 699 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 COL4A2P08572 1712 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 MIA3Q5JRA6 1907 aa16.21■□□□□ 0.19
TRIM28-203ENST00000593582 F5P12259 2224 aa16.21■□□□□ 0.18
TRIM28-203ENST00000593582 ZNF840PA6NDX5 716 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 CHRNB1P11230 501 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 CCDC130P13994 396 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 AMPD2Q01433 879 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 CSTF1Q05048 431 aaKnown RBP16.2■□□□□ 0.18
TRIM28-203ENST00000593582 MTF1Q14872 753 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 PDGFRLQ15198 375 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 ZNF77Q15935 545 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 ZNF528Q3MIS6 628 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 DCAF17Q5H9S7 520 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-203ENST00000593582 WDR44Q5JSH3 913 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 TRIM68Q6AZZ1 485 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 PAQR9Q6ZVX9 377 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 ZC3H3Q8IXZ2 948 aaKnown RBP16.2■□□□□ 0.18
TRIM28-203ENST00000593582 C12orf29Q8N999 325 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms