RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ZNF233A6NK53 670 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 K7EQS6 105 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 EIF3DO15371 548 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLIP3-204ENST00000590559 TACC1O75410 805 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 CST3P01034 146 aaPredicted RBP12.55□□□□□ -0.4
CLIP3-204ENST00000590559 CKMP06732 381 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 FAM163BP0C2L3 166 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 HDCP19113 662 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 BDNFP23560 247 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 PSMC1P62191 440 aaKnown RBP12.55□□□□□ -0.4
CLIP3-204ENST00000590559 SLC7A9P82251 487 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 DMC1Q14565 340 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 CCDC6Q16204 474 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 DUOXA2Q1HG44 320 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 DENND5BQ6ZUT9 1274 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 TRAPPC11Q7Z392 1133 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 SCN4BQ8IWT1 228 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 CCDC65Q8IXS2 484 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 MYCBPAPQ8TBZ2 947 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 PCED1BQ96HM7 432 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 C8orf48Q96LL4 319 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 TRIM9Q9C026 710 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 RNF38Q9H0F5 515 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 ZSCAN16Q9H4T2 348 aaPredicted RBP12.55□□□□□ -0.4
CLIP3-204ENST00000590559 KIAA1586Q9HCI6 787 aa12.55□□□□□ -0.4
CLIP3-204ENST00000590559 DMXL2Q8TDJ6 3036 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 ZNF840PA6NDX5 716 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 ANTXRLA6NF34 631 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 APBB3O95704 486 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 OAS1P00973 400 aaKnown RBP12.54□□□□□ -0.4
CLIP3-204ENST00000590559 CCDC192P0DO97 292 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 PMLP29590 882 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 MPLP40238 635 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 IFNAR2P48551 515 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 CACNA2D1P54289 1103 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 MAPRE1Q15691 268 aaKnown RBP12.54□□□□□ -0.4
CLIP3-204ENST00000590559 AASDHQ4L235 1098 aaPredicted RBP12.54□□□□□ -0.4
CLIP3-204ENST00000590559 STPG1Q5TH74 334 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 RASSF3Q86WH2 238 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 ADGRG2Q8IZP9 1017 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 PDILTQ8N807 584 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 USP33Q8TEY7 942 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 ZNF516Q92618 1163 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 EXOC4Q96A65 974 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 MRPL45Q9BRJ2 306 aaKnown RBP12.54□□□□□ -0.4
CLIP3-204ENST00000590559 CUEDC2Q9H467 287 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 SMOC1Q9H4F8 434 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 CEP192Q8TEP8 1941 aa12.54□□□□□ -0.4
CLIP3-204ENST00000590559 MYO18AQ92614 2054 aaKnown RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 A0A0A0MRY4 1105 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 LEFTY2O00292 366 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 DCLK1O15075 740 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 PPP6R2O75170 966 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 STAU1O95793 577 aaKnown RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 TNNC2P02585 160 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 PDGFRBP09619 1106 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 GRIK1P39086 918 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 PPP3CCP48454 512 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 PDE6CP51160 858 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 SHC2P98077 582 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 MESP2Q0VG99 397 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 NR1H3Q13133 447 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 KCNB1Q14721 858 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 PSMD6Q15008 389 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 SNRNP35Q16560 246 aaKnown RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 N4BP2L1Q5TBK1 243 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 C12orf50Q8NA57 414 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 ACDQ96AP0 544 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 C7orf25Q9BPX7 421 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 LSM14BQ9BX40 385 aaKnown RBP12.53□□□□□ -0.4
CLIP3-204ENST00000590559 XYLT2Q9H1B5 865 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 VPS45Q9NRW7 570 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 AGPAT3Q9NRZ7 376 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 FREM2Q5SZK8 3169 aa12.53□□□□□ -0.4
CLIP3-204ENST00000590559 LAMA5O15230 3695 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 BCLAF3A2AJT9 711 aaKnown RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 F8VP50 259 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 TRIM66O15016 1216 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 STX6O43752 255 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 NFATC1O95644 943 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 CYP17A1P05093 508 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 HNRNPLP14866 589 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 GNL1P36915 607 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 EIF2DP41214 584 aaKnown RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 SNRPFP62306 86 aaKnown RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 CYP24A1Q07973 514 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 BMT2Q1RMZ1 405 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 PMS2CLQ68D20 193 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 IL31Q6EBC2 164 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 TCEAL6Q6IPX3 200 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 SHC4Q6S5L8 630 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 STXBP4Q6ZWJ1 553 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 C12orf56Q8IXR9 622 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 CCDC26Q8TAB7 109 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 OLIG1Q8TAK6 271 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 NOC3LQ8WTT2 800 aaKnown RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 SCFD1Q8WVM8 642 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 TCEAL3Q969E4 200 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 ZFRQ96KR1 1074 aaKnown RBP12.52□□□□□ -0.41
CLIP3-204ENST00000590559 CGRRF1Q99675 332 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms