RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 AGO2Q9UKV8 859 aaKnown RBP13.67□□□□□ -0.22
SS18-219ENST00000581570 L1RE1Q9UN81 338 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 ASCC3Q8N3C0 2202 aaKnown RBP13.67□□□□□ -0.22
SS18-219ENST00000581570 TSC2P49815 1807 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 TCRBV21S2A2A0A5A6 115 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 TULP1O00294 542 aaPredicted RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 AP5Z1O43299 807 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 KAT7O95251 611 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 CYP17A1P05093 508 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 CD59P13987 128 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 HMGN5P82970 282 aaKnown RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 GTF2BQ00403 316 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 POU5F1Q01860 360 aaKnown RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 RPL6Q02878 288 aaKnown RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 MESP2Q0VG99 397 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 DHX8Q14562 1220 aaKnown RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 DHCR24Q15392 516 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 CFAP221Q4G0U5 840 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 TMEM119Q4V9L6 283 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 RABEPKQ7Z6M1 372 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 FILIP1Q7Z7B0 1213 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 GPBP1Q86WP2 473 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 NT5DC4Q86YG4 428 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 OR2I1PQ8NGU4 316 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 PKMYT1Q99640 499 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 ZHX3Q9H4I2 956 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 CCDC86Q9H6F5 360 aaKnown RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 CAPN10Q9HC96 672 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 ZDHHC4Q9NPG8 344 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 AGAP1Q9UPQ3 857 aa13.66□□□□□ -0.22
SS18-219ENST00000581570 FARP1Q9Y4F1 1045 aaPredicted RBP13.66□□□□□ -0.22
SS18-219ENST00000581570 ZNF638Q14966 1978 aaKnown RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 A0A0A0MRY4 1105 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 PCNX2A6NKB5 2137 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 TISP43B9A030 160 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 ARHGAP33O14559 1287 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 SLC9A3R1O14745 358 aaPredicted RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 ADAM23O75077 832 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 IL18RAPO95256 599 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 SYPP08247 313 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 CHRM1P11229 460 aaPredicted RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 PFKLP17858 780 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 POLR2BP30876 1174 aaKnown RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 ABCD1P33897 745 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 EIF2DP41214 584 aaKnown RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 GRIA2P42262 883 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 TNFRSF4P43489 277 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 KIR2DL1P43626 348 aaPredicted RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 ZNF131P52739 623 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 ATP2C1P98194 919 aaPredicted RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 ZNF33AQ06730 810 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 RESTQ13127 1097 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 TRIP6Q15654 476 aaKnown RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 CCDC142Q17RM4 750 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 CRELD2Q6UXH1 353 aaPredicted RBP13.65□□□□□ -0.22
SS18-219ENST00000581570 SLC36A4Q6YBV0 504 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 OSTM1Q86WC4 334 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 TMEM86AQ8N2M4 240 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 FUBP3Q96I24 572 aaKnown RBP eCLIP13.65□□□□□ -0.22
SS18-219ENST00000581570 CAMK1GQ96NX5 476 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 ARHGEF4Q9NR80 690 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 TRPM5Q9NZQ8 1165 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 LIMCH1Q9UPQ0 1083 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 PCDHB9Q9Y5E1 797 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 STYXL1Q9Y6J8 313 aa13.65□□□□□ -0.22
SS18-219ENST00000581570 DENND4CQ5VZ89 1909 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 SCN1AP35498 2009 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 VWA3AA6NCI4 1184 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 SH3BP5O60239 455 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 ITGB3P05106 788 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 KRT18P05783 430 aaKnown RBP13.64□□□□□ -0.23
SS18-219ENST00000581570 PCSK1P29120 753 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 MAGEA11P43364 429 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 LHX1P48742 406 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 SLC7A9P82251 487 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 TFAMQ00059 246 aaKnown RBP13.64□□□□□ -0.23
SS18-219ENST00000581570 RHBDF2Q6PJF5 856 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 CCNI2Q6ZMN8 369 aaPredicted RBP13.64□□□□□ -0.23
SS18-219ENST00000581570 C12orf40Q86WS4 652 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 KIAA1958Q8N8K9 716 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 HNRNPLLQ8WVV9 542 aaKnown RBP13.64□□□□□ -0.23
SS18-219ENST00000581570 ADAMTS14Q8WXS8 1223 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 FIZ1Q96SL8 496 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 DNAAF2Q9NVR5 837 aaKnown RBP13.64□□□□□ -0.23
SS18-219ENST00000581570 KIAA1549LQ6ZVL6 1849 aa13.64□□□□□ -0.23
SS18-219ENST00000581570 MYO16Q9Y6X6 1858 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 ADAMTS20P59510 1910 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 EIF4E1BA6NMX2 242 aaKnown RBP13.63□□□□□ -0.23
SS18-219ENST00000581570 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.63□□□□□ -0.23
SS18-219ENST00000581570 SCAMP3O14828 347 aaKnown RBP13.63□□□□□ -0.23
SS18-219ENST00000581570 HCRTO43612 131 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 ADH1CP00326 375 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 FTH1P19P0C7X4 201 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 GRIK1P39086 918 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 KDSRQ06136 332 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 SLC14A1Q13336 389 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 POSTNQ15063 836 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 FAM171BQ6P995 826 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 C4orf50Q6ZRC1 276 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 DENND5BQ6ZUT9 1274 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms