RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SMARCD1Q96GM5 515 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 LRRC3BQ96PB8 259 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 DNAI2Q9GZS0 605 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 FAM124BQ9H5Z6 455 aaPredicted RBP15.78■□□□□ 0.12
SS18-212ENST00000579061 C8orf33Q9H7E9 229 aaPredicted RBP15.78■□□□□ 0.12
SS18-212ENST00000579061 MMRN2Q9H8L6 949 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 APOBEC3GQ9HC16 384 aaKnown RBP15.78■□□□□ 0.12
SS18-212ENST00000579061 TDP1Q9NUW8 608 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 THG1LQ9NWX6 298 aaKnown RBP15.78■□□□□ 0.12
SS18-212ENST00000579061 RAB20Q9NX57 234 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 ARMCX3Q9UH62 379 aaPredicted RBP15.78■□□□□ 0.12
SS18-212ENST00000579061 COQ4Q9Y3A0 265 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 CACNA1IQ9P0X4 2223 aa15.78■□□□□ 0.12
SS18-212ENST00000579061 SHISA7A6NL88 538 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 CLDN5O00501 218 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 RTN3O95197 1032 aaPredicted RBP15.77■□□□□ 0.12
SS18-212ENST00000579061 CD44P16070 742 aaKnown RBP15.77■□□□□ 0.12
SS18-212ENST00000579061 BMP6P22004 513 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 UBXN2BQ14CS0 331 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 ISM2Q6H9L7 571 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 PAQR9Q6ZVX9 377 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 ACOT1Q86TX2 421 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 FAM35AQ86V20 835 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 NUP93Q8N1F7 819 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 USP13Q92995 863 aaPredicted RBP15.77■□□□□ 0.12
SS18-212ENST00000579061 MED10Q9BTT4 135 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 NT5C1AQ9BXI3 368 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 TMEM30AQ9NV96 361 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 COMMD8Q9NX08 183 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 TRPM5Q9NZQ8 1165 aa15.77■□□□□ 0.12
SS18-212ENST00000579061 COL4A3Q01955 1670 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 TRAV19A0A0A6YYK7 116 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 FAM170BA6NMN3 283 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 DCNP07585 359 aaKnown RBP15.76■□□□□ 0.11
SS18-212ENST00000579061 USP17L7P0C7H9 530 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 TCF3P15923 654 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 TARSP26639 723 aaKnown RBP15.76■□□□□ 0.11
SS18-212ENST00000579061 RPS9P46781 194 aaKnown RBP15.76■□□□□ 0.11
SS18-212ENST00000579061 CACNA2D1P54289 1103 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 USP46P62068 366 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 WDR44Q5JSH3 913 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 TCERG1LQ5VWI1 586 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 TTI2Q6NXR4 508 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 CLEC17AQ6ZS10 378 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 FRMD5Q7Z6J6 570 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 GPIHBP1Q8IV16 184 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 FUKQ8N0W3 1084 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 OVCA2Q8WZ82 227 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 SEMA4DQ92854 862 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 SLC35C1Q96A29 364 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 CLDN23Q96B33 292 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 SLITRK1Q96PX8 696 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 DUSP9Q99956 384 aaKnown RBP15.76■□□□□ 0.11
SS18-212ENST00000579061 DMAP1Q9NPF5 467 aaPredicted RBP15.76■□□□□ 0.11
SS18-212ENST00000579061 IL37Q9NZH6 218 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 GCNT4Q9P109 453 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 KIAA1468Q9P260 1216 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 PIAS3Q9Y6X2 628 aa15.76■□□□□ 0.11
SS18-212ENST00000579061 PATJQ8NI35 1801 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 H0Y858 1186 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 PMM2O15305 246 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 CILPO75339 1184 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 CD72P21854 359 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 ANGPT1Q15389 498 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 DCAF17Q5H9S7 520 aaPredicted RBP15.75■□□□□ 0.11
SS18-212ENST00000579061 PDZD8Q8NEN9 1154 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 NELFBQ8WX92 580 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 ATOH1Q92858 354 aaPredicted RBP15.75■□□□□ 0.11
SS18-212ENST00000579061 HNRNPABQ99729 332 aaKnown RBP15.75■□□□□ 0.11
SS18-212ENST00000579061 FAM83CQ9BQN1 747 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 SMG9Q9H0W8 520 aaKnown RBP15.75■□□□□ 0.11
SS18-212ENST00000579061 CSNK1G1Q9HCP0 422 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 TRPC7Q9HCX4 862 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 HMGXB4Q9UGU5 601 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 CCL26Q9Y258 94 aa15.75■□□□□ 0.11
SS18-212ENST00000579061 MTF2Q9Y483 593 aaPredicted RBP15.75■□□□□ 0.11
SS18-212ENST00000579061 ZNF840PA6NDX5 716 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 BIN1O00499 593 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 TNFRSF10BO14763 440 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 LRRN2O75325 713 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 AP1G2O75843 785 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 GNA14O95837 355 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 CKMP06732 381 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 HDCP19113 662 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 YWHAQP27348 245 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 HOXD11P31277 338 aaPredicted RBP15.74■□□□□ 0.11
SS18-212ENST00000579061 TAF10Q12962 218 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 USP4Q13107 963 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 PAK1Q13153 545 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 CCDC40Q4G0X9 1142 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 CBWD6Q4V339 395 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 CBWD3Q5JTY5 395 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 CBWD5Q5RIA9 395 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 KLHL10Q6JEL2 608 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 RALGPS2Q86X27 583 aaPredicted RBP15.74■□□□□ 0.11
SS18-212ENST00000579061 C1orf210Q8IVY1 113 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 ZNF687Q8N1G0 1237 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 KIAA1958Q8N8K9 716 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 SLC2A14Q8TDB8 520 aa15.74■□□□□ 0.11
SS18-212ENST00000579061 WHAMMQ8TF30 809 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms