RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SLC18A3Q16572 532 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 IFI16Q16666 785 aaKnown RBP10.82□□□□□ -0.68
SS18-207ENST00000577636 ST3GAL2Q16842 350 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 DUOXA2Q1HG44 320 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 ZNF569Q5MCW4 686 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 C1orf220Q5T0J3 134 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 HGSNATQ68CP4 663 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 TANGO2Q6ICL3 276 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 SV2AQ7L0J3 742 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 ZSWIM2Q8NEG5 633 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 PLEKHO2Q8TD55 490 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 FAM212AQ96EL1 285 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 ANKRD36BP1Q96IX9 119 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 ZBTB45Q96K62 511 aaPredicted RBP10.82□□□□□ -0.68
SS18-207ENST00000577636 ALS2CR12Q96Q35 445 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 TUBB2BQ9BVA1 445 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 CXCL16Q9H2A7 254 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 EPC1Q9H2F5 836 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 RPF1Q9H9Y2 349 aaKnown RBP10.82□□□□□ -0.68
SS18-207ENST00000577636 PDE11AQ9HCR9 933 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 PARD6AQ9NPB6 346 aa10.82□□□□□ -0.68
SS18-207ENST00000577636 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.82□□□□□ -0.68
SS18-207ENST00000577636 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 PTGESO14684 152 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 LILRB5O75023 590 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 TACC1O75410 805 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 B3GAT3O94766 335 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 PLEKP08567 350 aaPredicted RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 TBXAS1P24557 533 aaPredicted RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 HOXA9P31269 272 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 ELF1P32519 619 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 NAP1L1P55209 391 aaKnown RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 BPIFB4P59827 614 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 CYP27A1Q02318 531 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 GCNT1Q02742 428 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 PTK2Q05397 1052 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 GFPT1Q06210 699 aaPredicted RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 ELAVL2Q12926 359 aaKnown RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 TRPC3Q13507 836 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 RAB33AQ14088 237 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 DCAF4L1Q3SXM0 396 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 GJB7Q6PEY0 223 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 IRF2BP2Q7Z5L9 587 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 LMO3Q8TAP4 145 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 TAS1R2Q8TE23 839 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 CLDN23Q96B33 292 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 CCDC94Q9BW85 323 aaPredicted RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 BRD9Q9H8M2 597 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 LMAN1LQ9HAT1 526 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 CPSF3Q9UKF6 684 aaKnown RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 CDY1Q9Y6F8 540 aa10.81□□□□□ -0.68
SS18-207ENST00000577636 MTCL1Q9Y4B5 1905 aaKnown RBP10.81□□□□□ -0.68
SS18-207ENST00000577636 OTOGLQ3ZCN5 2332 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 GPR179Q6PRD1 2367 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 TTLL13PA6NNM8 815 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 I3L4J1 428 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 ECI2O75521 394 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 RECQL4O94761 1208 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 URI1O94763 535 aaPredicted RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 HLA-DRAP01903 254 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 LRG1P02750 347 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 CEBPBP17676 345 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 PTPN2P17706 415 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 TNFAIP3P21580 790 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 TGM1P22735 817 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 PROZP22891 400 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 YARSP54577 528 aaKnown RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 NRLP54845 237 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 FZD5Q13467 585 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 SLC5A9Q2M3M2 681 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 ZACNQ401N2 412 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 PPM1JQ5JR12 505 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 GLRA4Q5JXX5 417 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 SMYD5Q6GMV2 418 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 DPY19L2P1Q6NXN4 242 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 POTEHQ6S545 545 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 CRELD2Q6UXH1 353 aaPredicted RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 CD302Q8IX05 232 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 RNF10Q8N5U6 811 aaKnown RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 TRIM58Q8NG06 486 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 NOX5Q96PH1 765 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 NAPGQ99747 312 aaPredicted RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 CORO1BQ9BR76 489 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 CDT1Q9H211 546 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 ASB7Q9H672 318 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 ZFP14Q9HCL3 533 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 PTPRHQ9HD43 1115 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 TOPORSQ9NS56 1045 aaPredicted RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 SEPT11Q9NVA2 429 aaKnown RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 ADAMTS1Q9UHI8 967 aa10.8□□□□□ -0.68
SS18-207ENST00000577636 TDRD15B5MCY1 1934 aaKnown RBP10.8□□□□□ -0.68
SS18-207ENST00000577636 CACNA1BQ00975 2339 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 FOXN3O00409 490 aaPredicted RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 MAN2B1O00754 1011 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 PRRG1O14668 218 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 PJA2O43164 708 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 C4BPAP04003 597 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 ADRB1P08588 477 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 KRT5P13647 590 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 TKTP29401 623 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms