RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TRABD2AQ86V40 505 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 NT5DC4Q86YG4 428 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 PPIL6Q8IXY8 311 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 TTC39CQ8N584 583 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 NAT8LQ8N9F0 302 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 GDAP1Q8TB36 358 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 UBA3Q8TBC4 463 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 NLRP7Q8WX94 980 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 CPT1BQ92523 772 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 MAGEB18Q96M61 343 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 ADPGKQ9BRR6 497 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 KATNBL1Q9H079 304 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 C10orf88Q9H8K7 445 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 ASNSD1Q9NWL6 643 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 DPP3Q9NY33 737 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 KIAA1257Q9ULG3 409 aa10.57□□□□□ -0.72
VPS53-220ENST00000576149 FAM47DPA6NHR8 397 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 APOC4-APOC2K7ER74 178 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 APOC2P02655 101 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 CYP3A5P20815 502 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 STX2P32856 288 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 RPL22P35268 128 aaKnown RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 ADCYAP1R1P41586 468 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 RASA2Q15283 850 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 HIF1AQ16665 826 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 NUGGCQ68CJ6 796 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 TRPM8Q7Z2W7 1104 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 RFX6Q8HWS3 928 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 SUGP1Q8IWZ8 645 aaKnown RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 SDR16C5Q8N3Y7 309 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 RSAD2Q8WXG1 361 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 HSPH1Q92598 858 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 VPS37BQ9H9H4 285 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 PPCSQ9HAB8 311 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 SLC40A1Q9NP59 571 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 USP15Q9Y4E8 981 aaPredicted RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 C2CD4BA6NLJ0 364 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 POC1B-GALNT4F8VUJ3 575 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 H3BRB1 525 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 GOLGA8MH3BSY2 632 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 DNAJC8O75937 253 aaPredicted RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 ENDOD1O94919 500 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 GPD1P21695 349 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 EPHX2P34913 555 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 ADCY1Q08828 1119 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 MARCH8Q5T0T0 291 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 ANKRD22Q5VYY1 191 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 DPH6Q7L8W6 267 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 UNC45BQ8IWX7 931 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 L3MBTL3Q96JM7 780 aaPredicted RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 TGS1Q96RS0 853 aaKnown RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 PEBP4Q96S96 227 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 CNPY3Q9BT09 278 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 NT5C1AQ9BXI3 368 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 CALN1Q9BXU9 219 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 TUT1Q9H6E5 874 aaKnown RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 RSAD1Q9HA92 442 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.56□□□□□ -0.72
VPS53-220ENST00000576149 SLC24A2Q9UI40 661 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 TSPAN16Q9UKR8 245 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 SLC12A4Q9UP95 1085 aa10.56□□□□□ -0.72
VPS53-220ENST00000576149 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 ATP2C2O75185 946 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SNAI1O95863 264 aaPredicted RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 PFKMP08237 780 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 GSTA1P08263 222 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 GRM5P41594 1212 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SLC18A1P54219 525 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 GPX6P59796 221 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 EIF3EP60228 445 aaKnown RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 GAD2Q05329 585 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 XRCC4Q13426 336 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 C9orf131Q5VYM1 1079 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 TRNP1Q6NT89 227 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 CYP4V2Q6ZWL3 525 aaPredicted RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 ZNF467Q7Z7K2 595 aaPredicted RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 ANKMY2Q8IV38 441 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 RXFP2Q8WXD0 754 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SLC10A4Q96EP9 437 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 MIS12Q9H081 205 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SENP1Q9P0U3 644 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 ZMYND8Q9ULU4 1186 aaPredicted RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 CLUHO75153 1309 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 E5RJQ4 531 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 E7ESA3 106 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SMAPO00193 183 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 MCF2LO15068 1137 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 PRPF4O43172 522 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS53-220ENST00000576149 BANF1O75531 89 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SUN1O94901 812 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 RBP3P10745 1247 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 PDGFRAP16234 1089 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 RDXP35241 583 aaKnown RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 ARL4CP56559 192 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 WDR4P57081 412 aaKnown RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 STILQ15468 1287 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 GRIK4Q16099 956 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 PKN2Q16513 984 aaKnown RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 MSS51Q4VC12 460 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 EFHC2Q5JST6 749 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms