RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 STK36Q9NRP7 1315 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 TRAV19A0A0A6YYK7 116 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 ANO9A1A5B4 782 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 ENC1O14682 589 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 CKMP06732 381 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 HAPLN1P10915 354 aaPredicted RBP17.56■□□□□ 0.4
VPS53-218ENST00000575207 NCAM1P13591 858 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 ADD1P35611 737 aaKnown RBP17.56■□□□□ 0.4
VPS53-218ENST00000575207 CCT8P50990 548 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 SLC39A12Q504Y0 691 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 XKR5Q6UX68 686 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 KIAA1958Q8N8K9 716 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 KCNE4Q8WWG9 221 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 ZFRQ96KR1 1074 aaKnown RBP17.56■□□□□ 0.4
VPS53-218ENST00000575207 NACC1Q96RE7 527 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 GCNT4Q9P109 453 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 TNFSF13BQ9Y275 285 aa17.56■□□□□ 0.4
VPS53-218ENST00000575207 E2F8A0AVK6 867 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 METTL12A8MUP2 240 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 KLK10O43240 276 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 PRPF3O43395 683 aaKnown RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 LIG1P18858 919 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 NTSR1P30989 418 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 RCAN1P53805 252 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 OSTNP61366 133 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 RESTQ13127 1097 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 HDAC1Q13547 482 aaPredicted RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 DHCR24Q15392 516 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 ZC2HC1CQ53FD0 456 aaPredicted RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 DCAF12L1Q5VU92 463 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 OR10T2Q8NGX3 314 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 IPO4Q8TEX9 1081 aaKnown RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 LRRC15Q8TF66 581 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 C2orf15Q8WU43 125 aaKnown RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 BSNDQ8WZ55 320 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 IGSF8Q969P0 613 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 MRGPRX1Q96LB2 322 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 HSD17B14Q9BPX1 270 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 CDT1Q9H211 546 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 HCN2Q9UL51 889 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 ARHGAP26Q9UNA1 814 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 SNX11Q9Y5W9 270 aa17.55■□□□□ 0.4
VPS53-218ENST00000575207 SETD2Q9BYW2 2564 aaPredicted RBP17.55■□□□□ 0.4
VPS53-218ENST00000575207 USO1O60763 962 aaKnown RBP17.54■□□□□ 0.4
VPS53-218ENST00000575207 LRPAP1P30533 357 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 CSNK1EP49674 416 aaKnown RBP17.54■□□□□ 0.4
VPS53-218ENST00000575207 ACADVLP49748 655 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 NCAPH2Q6IBW4 605 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 MAEAQ7L5Y9 396 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 METTL3Q86U44 580 aaKnown RBP17.54■□□□□ 0.4
VPS53-218ENST00000575207 MCPH1Q8NEM0 835 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 SPPL2BQ8TCT7 592 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 RFFLQ8WZ73 363 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 HAS1Q92839 578 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 TOE1Q96GM8 510 aaKnown RBP17.54■□□□□ 0.4
VPS53-218ENST00000575207 CCDC43Q96MW1 224 aaKnown RBP17.54■□□□□ 0.4
VPS53-218ENST00000575207 MTMR9Q96QG7 549 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 ZCWPW1Q9H0M4 648 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 TRPC7Q9HCX4 862 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 PTPRHQ9HD43 1115 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 TUBGCP4Q9UGJ1 667 aa17.54■□□□□ 0.4
VPS53-218ENST00000575207 CSH1P0DML2 217 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 CSH2P0DML3 217 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 ITGB6P18564 788 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 GLDCP23378 1020 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 NAMPTP43490 491 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 AFF3P51826 1226 aaKnown RBP17.53■□□□□ 0.4
VPS53-218ENST00000575207 TLE1Q04724 770 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 KDSRQ06136 332 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 SMARCB1Q12824 385 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 DNAJC3Q13217 504 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 DSTYKQ6XUX3 929 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 MIB1Q86YT6 1006 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 ARL14EPQ8N8R7 260 aaPredicted RBP17.53■□□□□ 0.4
VPS53-218ENST00000575207 DCBLD1Q8N8Z6 715 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 DEPTORQ8TB45 409 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 GPR174Q9BXC1 333 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 EIF2B4Q9UI10 523 aaKnown RBP17.53■□□□□ 0.4
VPS53-218ENST00000575207 CITO14578 2027 aa17.53■□□□□ 0.4
VPS53-218ENST00000575207 TBC1D3BA6NDS4 549 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 M0R2N6 131 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 DXOO77932 396 aaKnown RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 TNFSF9P41273 254 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 EFNA5P52803 228 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 ZXDBP98169 803 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 B4GALNT3Q6L9W6 998 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 RHBDF2Q6PJF5 856 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 DHX32Q7L7V1 743 aaKnown RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 TRMT2BQ96GJ1 504 aaKnown RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 MYRFLQ96LU7 910 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 TTC12Q9H892 705 aaPredicted RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 VPS54Q9P1Q0 977 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 UXTQ9UBK9 157 aaPredicted RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 MAGED2Q9UNF1 606 aaPredicted RBP17.52■□□□□ 0.4
VPS53-218ENST00000575207 CLCA2Q9UQC9 943 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 STARD13Q9Y3M8 1113 aa17.52■□□□□ 0.4
VPS53-218ENST00000575207 TMEM131Q92545 1883 aa17.52■□□□□ 0.39
VPS53-218ENST00000575207 MYOFQ9NZM1 2061 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 BTBD18B2RXH4 712 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms