RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TTLL2Q9BWV7 592 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 DUSP15Q9H1R2 295 aaPredicted RBP22.51■■□□□ 1.19
VPS53-216ENST00000574029 SPTBN2O15020 2390 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 TRIM66O15016 1216 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 NFATC1O95644 943 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 CST3P01034 146 aaPredicted RBP22.5■■□□□ 1.19
VPS53-216ENST00000574029 MPLP40238 635 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 CYP27A1Q02318 531 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 PSMD2Q13200 908 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 KIAA1958Q8N8K9 716 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 MMS19Q96T76 1030 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 MRPL45Q9BRJ2 306 aaKnown RBP22.5■■□□□ 1.19
VPS53-216ENST00000574029 CUEDC2Q9H467 287 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 VPS45Q9NRW7 570 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 EHD2Q9NZN4 543 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 TRPM5Q9NZQ8 1165 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 NME7Q9Y5B8 376 aa22.5■■□□□ 1.19
VPS53-216ENST00000574029 TGFB1I1O43294 461 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 TACC1O75410 805 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 FAM163BP0C2L3 166 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 ANXA13P27216 316 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 OPRD1P41143 372 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 PPP3CCP48454 512 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 NOP14P78316 857 aaKnown RBP22.49■■□□□ 1.19
VPS53-216ENST00000574029 STK38Q15208 465 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 SNRNP35Q16560 246 aaKnown RBP22.49■■□□□ 1.19
VPS53-216ENST00000574029 GAB4Q2WGN9 574 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 STPG1Q5TH74 334 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 CNNM4Q6P4Q7 775 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 CCDC26Q8TAB7 109 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 C8orf48Q96LL4 319 aa22.49■■□□□ 1.19
VPS53-216ENST00000574029 ZNF840PA6NDX5 716 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 LEFTY2O00292 366 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 STX6O43752 255 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 PPP6R2O75170 966 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 KRT37O76014 449 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 RHOBTB1O94844 696 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 OLFM2O95897 454 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 GNL1P36915 607 aaPredicted RBP22.48■■□□□ 1.19
VPS53-216ENST00000574029 SLC7A9P82251 487 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 AMPD3Q01432 767 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 PSMD6Q15008 389 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 USP33Q8TEY7 942 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 RNF38Q9H0F5 515 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 SNX25Q9H3E2 840 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 SMOC1Q9H4F8 434 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 AGPAT3Q9NRZ7 376 aa22.48■■□□□ 1.19
VPS53-216ENST00000574029 KMT2BQ9UMN6 2715 aaPredicted RBP22.47■■□□□ 1.19
VPS53-216ENST00000574029 F8VP50 259 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 K7EQS6 105 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 DCLK1O15075 740 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 SPTLC2O15270 562 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 TNNI1P19237 187 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 ASIC1P78348 528 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 ELF2Q15723 593 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 MDH1BQ5I0G3 518 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 RDH13Q8NBN7 331 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 CGRRF1Q99675 332 aa22.47■■□□□ 1.19
VPS53-216ENST00000574029 DLATP10515 647 aaKnown RBP22.46■■□□□ 1.19
VPS53-216ENST00000574029 SNRPFP62306 86 aaKnown RBP22.46■■□□□ 1.19
VPS53-216ENST00000574029 CYP24A1Q07973 514 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 FAM26FQ5R3K3 315 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 HS2ST1Q7LGA3 356 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 FILIP1Q7Z7B0 1213 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 ADGRG2Q8IZP9 1017 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 TSTD1Q8NFU3 115 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 OR6B3Q8NGW1 331 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 DHX58Q96C10 678 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 FNBP1Q96RU3 617 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 C7orf25Q9BPX7 421 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 FOXD4L1Q9NU39 408 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 UBE4BO95155 1302 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 SDK1Q7Z5N4 2213 aa22.46■■□□□ 1.19
VPS53-216ENST00000574029 CACNA1BQ00975 2339 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 BCLAF3A2AJT9 711 aaKnown RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 STAU1O95793 577 aaKnown RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 OAS1P00973 400 aaKnown RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 CYP17A1P05093 508 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 PTPN1P18031 435 aaKnown RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 KCNA4P22459 653 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 PMLP29590 882 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 DGKEP52429 567 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 CACNA2D1P54289 1103 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 EHHADHQ08426 723 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 WDR72Q3MJ13 1102 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 N4BP2L1Q5TBK1 243 aaPredicted RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 RASSF3Q86WH2 238 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 IQUBQ8NA54 791 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 XXYLT1Q8NBI6 393 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 SCFD1Q8WVM8 642 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 ZNF516Q92618 1163 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 CCDC127Q96BQ5 260 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 LSM14BQ9BX40 385 aaKnown RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 ELOVL4Q9GZR5 314 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 GZF1Q9H116 711 aaPredicted RBP22.45■■□□□ 1.18
VPS53-216ENST00000574029 DPEP3Q9H4B8 488 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 TMEM30AQ9NV96 361 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 CPQQ9Y646 472 aa22.45■■□□□ 1.18
VPS53-216ENST00000574029 ANTXRLA6NF34 631 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 CLIC2O15247 247 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms