RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 PAQR9Q6ZVX9 377 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 ACOT1Q86TX2 421 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 FAM83CQ9BQN1 747 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 CYP3A43Q9HB55 503 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 GCNT4Q9P109 453 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 MAN1B1Q9UKM7 699 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 MIA3Q5JRA6 1907 aa21.58■■□□□ 1.04
CLK3-225ENST00000569063 ATP8B3O60423 1300 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 TRAV19A0A0A6YYK7 116 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 SLC16A3O15427 465 aaKnown RBP21.57■■□□□ 1.04
CLK3-225ENST00000569063 USP17L7P0C7H9 530 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 PFKLP17858 780 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 CCNE1P24864 410 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 PPP1R2P41236 205 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 KPNA1P52294 538 aaPredicted RBP21.57■■□□□ 1.04
CLK3-225ENST00000569063 INCA1Q0VD86 236 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 DHTKD1Q96HY7 919 aaPredicted RBP21.57■■□□□ 1.04
CLK3-225ENST00000569063 SLC22A12Q96S37 553 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 CYP2S1Q96SQ9 504 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 MMRN2Q9H8L6 949 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 TRPC7Q9HCX4 862 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 GKN1Q9NS71 199 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 GTSE1Q9NYZ3 720 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 TRPM5Q9NZQ8 1165 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 CHMP5Q9NZZ3 219 aa21.57■■□□□ 1.04
CLK3-225ENST00000569063 NDRG2Q9UN36 371 aaKnown RBP21.57■■□□□ 1.04
CLK3-225ENST00000569063 C2orf78A6NCI8 922 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 PSMA7O14818 248 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 PDE6CP51160 858 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 STIM1Q13586 685 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 FAM35AQ86V20 835 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 RALGPS2Q86X27 583 aaPredicted RBP21.56■■□□□ 1.04
CLK3-225ENST00000569063 MAML2Q8IZL2 1156 aaPredicted RBP21.56■■□□□ 1.04
CLK3-225ENST00000569063 FUKQ8N0W3 1084 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 NUP93Q8N1F7 819 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 CCDC150Q8NCX0 1101 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 SMARCD1Q96GM5 515 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 FAXDC2Q96IV6 333 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 KCNK16Q96T55 309 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 MED10Q9BTT4 135 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 NIF3L1Q9GZT8 377 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 HMGXB4Q9UGU5 601 aa21.56■■□□□ 1.04
CLK3-225ENST00000569063 TRIM49BA6NDI0 452 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 ZNF840PA6NDX5 716 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 SPECC1L-ADORA2AF8WAN1 911 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 CD44P16070 742 aaKnown RBP21.55■■□□□ 1.04
CLK3-225ENST00000569063 HDCP19113 662 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 CTHP32929 405 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 MXI1P50539 228 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 TNK2Q07912 1038 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 ITPRIPL2Q3MIP1 535 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 ISM2Q6H9L7 571 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 ARL14EPQ8N8R7 260 aaPredicted RBP21.55■■□□□ 1.04
CLK3-225ENST00000569063 FBXL13Q8NEE6 735 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 RIN3Q8TB24 985 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 SEMA4DQ92854 862 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 DMAP1Q9NPF5 467 aaPredicted RBP21.55■■□□□ 1.04
CLK3-225ENST00000569063 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.55■■□□□ 1.049e-7■■■■■ 94
CLK3-225ENST00000569063 SPATA6Q9NWH7 488 aaPredicted RBP21.55■■□□□ 1.04
CLK3-225ENST00000569063 RAB20Q9NX57 234 aa21.55■■□□□ 1.04
CLK3-225ENST00000569063 KIF26AQ9ULI4 1882 aaPredicted RBP21.55■■□□□ 1.04
CLK3-225ENST00000569063 TNFRSF10BO14763 440 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 RTN3O95197 1032 aaPredicted RBP21.54■■□□□ 1.04
CLK3-225ENST00000569063 CKMP06732 381 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 SP9P0CG40 484 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 TCF3P15923 654 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 BMP6P22004 513 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 SOX9P48436 509 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 TAF10Q12962 218 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 ORC1Q13415 861 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 MORC3Q14149 939 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 CC2D1AQ6P1N0 951 aaPredicted RBP21.54■■□□□ 1.04
CLK3-225ENST00000569063 TTC8Q8TAM2 541 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 SLITRK1Q96PX8 696 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 LMAN1LQ9HAT1 526 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 CSNK1G1Q9HCP0 422 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 FBXO4Q9UKT5 387 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 ARHGAP26Q9UNA1 814 aa21.54■■□□□ 1.04
CLK3-225ENST00000569063 ANAPC1Q9H1A4 1944 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 LAMTOR5O43504 91 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 AP1G2O75843 785 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 CHRNB1P11230 501 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 CCDC130P13994 396 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 TRIM21P19474 475 aaKnown RBP21.53■■□□□ 1.04
CLK3-225ENST00000569063 YWHAQP27348 245 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 UBE2HP62256 183 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 RUNX3Q13761 415 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 ZNF77Q15935 545 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 ZNF528Q3MIS6 628 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 FOXR2Q6PJQ5 311 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 MAMSTRQ6ZN01 415 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 FRMD5Q7Z6J6 570 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 C12orf29Q8N999 325 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 SLC2A14Q8TDB8 520 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 WHAMMQ8TF30 809 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 OVCA2Q8WZ82 227 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 CEP63Q96MT8 703 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 TWNKQ96RR1 684 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 IER2Q9BTL4 223 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 NT5C1AQ9BXI3 368 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms