RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 PALB2Q86YC2 1186 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 WDTC1Q8N5D0 677 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 TTC9BQ8N6N2 239 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 ZMIZ2Q8NF64 920 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SLC30A5Q8TAD4 765 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SLC22A17Q8WUG5 538 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SMARCD1Q96GM5 515 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 PCDHB18PQ96TA0 734 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SMOQ99835 787 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 BAG1Q99933 345 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 MED10Q9BTT4 135 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 DUSP16Q9BY84 665 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 LHX5Q9H2C1 402 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 NHEJ1Q9H9Q4 299 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 KRT82Q9NSB4 513 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 TMEM30AQ9NV96 361 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 ABI2Q9NYB9 513 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 LMCD1Q9NZU5 365 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 HSFX1Q9UBD0 423 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 HESX1Q9UBX0 185 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 ATP8B3O60423 1300 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SCN1AP35498 2009 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 A0A087X0T9 212 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TULP2O00295 520 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 PER2O15055 1255 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 AP1G2O75843 785 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 BEST1O76090 585 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 LSM8O95777 96 aaKnown RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 GLUD1P00367 558 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 CYP1A1P04798 512 aaPredicted RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 FAM228BP0C875 321 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 SETSIPP0DME0 302 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 HOXB1P14653 301 aaPredicted RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 NPR3P17342 541 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 POU3F3P20264 500 aaPredicted RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TNFAIP3P21580 790 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 ANXA13P27216 316 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 CDH5P33151 784 aaPredicted RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 GPD2P43304 727 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 NOMO3P69849 1222 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 PDE4CQ08493 712 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 BST2Q10589 180 aaKnown RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 DUSP4Q13115 394 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 ADGRE1Q14246 886 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 DUSP6Q16828 381 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 VSTM1Q6UX27 236 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 CYP26C1Q6V0L0 522 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TRIM72Q6ZMU5 477 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 CLEC20AQ6ZU45 233 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 RBM23Q86U06 439 aaKnown RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TMTC1Q8IUR5 882 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 PASD1Q8IV76 773 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 LRRC8AQ8IWT6 810 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TCEAL8Q8IYN2 117 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TMEM35BQ8NCS4 154 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 UBA3Q8TBC4 463 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 SLC35F5Q8WV83 523 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 SECISBP2LQ93073 1101 aaKnown RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 C8orf48Q96LL4 319 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 KCNK16Q96T55 309 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 PDCL3Q9H2J4 239 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 NSUN3Q9H649 340 aaKnown RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TLE6Q9H808 572 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 DMAP1Q9NPF5 467 aaPredicted RBP8.94□□□□□ -0.98
SF3B3-212ENST00000568539 CHD7Q9P2D1 2997 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 ADAMTS1Q9UHI8 967 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 FBXW11Q9UKB1 542 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 SLC27A5Q9Y2P5 690 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 GBF1Q92538 1859 aa8.94□□□□□ -0.98
SF3B3-212ENST00000568539 TRIP11Q15643 1979 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SOWAHDA6NJG2 315 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 HHLA1C9JL84 531 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 F8VP50 259 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PRRG1O14668 218 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 XPO1O14980 1071 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SOAT2O75908 522 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PTMAP06454 111 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SPATA31D3P0C874 917 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 UNGP13051 313 aaPredicted RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 EPCAMP16422 314 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 ATF6P18850 670 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 ELF1P32519 619 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 GRIK1P39086 918 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PLA2G5P39877 138 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PLA2G4AP47712 749 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 NRIP1P48552 1158 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 TUFMP49411 452 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 GPR15P49685 360 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 KIF11P52732 1056 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 MAP3K7CLP57077 242 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SLC8A3P57103 927 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 RPL10AP62906 217 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CENPCQ03188 943 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 HYAL1Q12794 435 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 KCNC3Q14003 757 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CLEC16AQ2KHT3 1053 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 MGAT5BQ3V5L5 792 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 TCEAL5Q5H9L2 206 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 NAA35Q5VZE5 725 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 RAD9BQ6WBX8 426 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms