RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BRD9Q9H8M2 597 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 CYP3A43Q9HB55 503 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 UXTQ9UBK9 157 aaPredicted RBP15.99■□□□□ 0.15
VPS39-210ENST00000568357 CTNND2Q9UQB3 1225 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 SHISA7A6NL88 538 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 TRIM66O15016 1216 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 CD72P21854 359 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 ANXA13P27216 316 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 FCHO2Q0JRZ9 810 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 INCA1Q0VD86 236 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 MLF2Q15773 248 aaPredicted RBP15.98■□□□□ 0.15
VPS39-210ENST00000568357 FOXR2Q6PJQ5 311 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 C12orf29Q8N999 325 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 TRIML1Q8N9V2 468 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 CCDC150Q8NCX0 1101 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 DEPDC1BQ8WUY9 529 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 MRPS31Q92665 395 aaKnown RBP15.98■□□□□ 0.15
VPS39-210ENST00000568357 IRF7Q92985 503 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 CEP295NLQ96MC4 621 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 CYP2S1Q96SQ9 504 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 DDX23Q9BUQ8 820 aaKnown RBP15.98■□□□□ 0.15
VPS39-210ENST00000568357 FOXQ1Q9C009 403 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 HEBP1Q9NRV9 189 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 LMBRD1Q9NUN5 540 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 CCL26Q9Y258 94 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 COQ4Q9Y3A0 265 aa15.98■□□□□ 0.15
VPS39-210ENST00000568357 BICDL2A1A5D9 508 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 ARNTLO00327 626 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 DPYSL4O14531 572 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 ZNF263O14978 683 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 CCDC130P13994 396 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 CD58P19256 250 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 DDX6P26196 483 aaKnown RBP eCLIP15.97■□□□□ 0.15
VPS39-210ENST00000568357 PRKCQQ04759 706 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 PAK1Q13153 545 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 FAM35AQ86V20 835 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 SLC2A14Q8TDB8 520 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 DNASE1L2Q92874 299 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 USP13Q92995 863 aaPredicted RBP15.97■□□□□ 0.15
VPS39-210ENST00000568357 SHDQ96IW2 340 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 MED15Q96RN5 788 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 SLC22A12Q96S37 553 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 MED10Q9BTT4 135 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 TTLL2Q9BWV7 592 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 CLSTN2Q9H4D0 955 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 METTL14Q9HCE5 456 aaKnown RBP15.97■□□□□ 0.15
VPS39-210ENST00000568357 TRPV5Q9NQA5 729 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 OBP2AQ9NY56 170 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 ZMYM5Q9UJ78 669 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 MTF2Q9Y483 593 aaPredicted RBP15.97■□□□□ 0.15
VPS39-210ENST00000568357 NCOR2Q9Y618 2525 aa15.97■□□□□ 0.15
VPS39-210ENST00000568357 COL4A3Q01955 1670 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 KANSL1LA0AUZ9 987 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 SOBPA7XYQ1 873 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 CHADO15335 359 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 CILPO75339 1184 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 BEST1O76090 585 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 AVPR1AP37288 418 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 CCDC40Q4G0X9 1142 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 WDR44Q5JSH3 913 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 YAF2Q8IY57 180 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 KIAA2013Q8IYS2 634 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 CELF5Q8N6W0 485 aaKnown RBP15.96■□□□□ 0.15
VPS39-210ENST00000568357 ZFYVE19Q96K21 471 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 IPO9Q96P70 1041 aaKnown RBP15.96■□□□□ 0.15
VPS39-210ENST00000568357 SMOQ99835 787 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 ARID3AQ99856 593 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 NT5C1AQ9BXI3 368 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 SRRTQ9BXP5 876 aaKnown RBP15.96■□□□□ 0.15
VPS39-210ENST00000568357 TRPC7Q9HCX4 862 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 FAM49BQ9NUQ9 324 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 SIT1Q9Y3P8 196 aa15.96■□□□□ 0.15
VPS39-210ENST00000568357 EPG5Q9HCE0 2579 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 C2orf78A6NCI8 922 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 TNFRSF10BO14763 440 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 DCNP07585 359 aaKnown RBP15.95■□□□□ 0.14
VPS39-210ENST00000568357 GLULP15104 373 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 RFX1P22670 979 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 FMO5P49326 533 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 TAF10Q12962 218 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 ANGPT1Q15389 498 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 ZNF394Q53GI3 561 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 TPRG1Q6ZUI0 275 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 NUP93Q8N1F7 819 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 ZMIZ2Q8NF64 920 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 SCAMP5Q8TAC9 235 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 RIN3Q8TB24 985 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 BPIFB1Q8TDL5 484 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 CYFIP2Q96F07 1278 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 SMARCD1Q96GM5 515 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 FAXDC2Q96IV6 333 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 HNRNPABQ99729 332 aaKnown RBP15.95■□□□□ 0.14
VPS39-210ENST00000568357 KRT82Q9NSB4 513 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 CISHQ9NSE2 258 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 TDP1Q9NUW8 608 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 GCNT4Q9P109 453 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 DLGAP2Q9P1A6 1054 aa15.95■□□□□ 0.14
VPS39-210ENST00000568357 ZNF840PA6NDX5 716 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 FAM170BA6NMN3 283 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 AP1G2O75843 785 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms