RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HERC2P3Q9BVR0 1158 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 TRIM7Q9C029 511 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 PCDHB12Q9Y5F1 795 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 NCK2O43639 380 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 SOD2P04179 222 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 RPL34P49207 117 aaKnown RBP32.22■■■□□ 2.75
CTCF-203ENST00000566078 PPP1R15BQ5SWA1 713 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 RASIP1Q5U651 963 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 SP7Q8TDD2 431 aaPredicted RBP32.22■■■□□ 2.75
CTCF-203ENST00000566078 RIN2Q8WYP3 895 aaPredicted RBP32.22■■■□□ 2.75
CTCF-203ENST00000566078 METTL5Q9NRN9 209 aaKnown RBP32.22■■■□□ 2.75
CTCF-203ENST00000566078 TMEM30AQ9NV96 361 aa32.22■■■□□ 2.75
CTCF-203ENST00000566078 GABBR2O75899 941 aa32.21■■■□□ 2.75
CTCF-203ENST00000566078 ACADSBP45954 432 aa32.21■■■□□ 2.75
CTCF-203ENST00000566078 TAP1Q03518 808 aa32.21■■■□□ 2.75
CTCF-203ENST00000566078 DCUN1D2Q6PH85 259 aa32.21■■■□□ 2.75
CTCF-203ENST00000566078 TBC1D4O60343 1298 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 LINC00271P0C7V0 271 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 LCP1P13796 627 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 MAGEA10P43363 369 aaPredicted RBP32.2■■■□□ 2.75
CTCF-203ENST00000566078 ARPP19P56211 112 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 RPL7AP62424 266 aaKnown RBP32.2■■■□□ 2.75
CTCF-203ENST00000566078 PSMD5Q16401 504 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 NFE2Q16621 373 aaPredicted RBP32.2■■■□□ 2.75
CTCF-203ENST00000566078 FAM102AQ5T9C2 384 aaPredicted RBP32.2■■■□□ 2.75
CTCF-203ENST00000566078 MEI1Q5TIA1 1274 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 KIAA1841Q6NSI8 718 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 PEX26Q7Z412 305 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 ZMIZ2Q8NF64 920 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 OXCT2Q9BYC2 517 aaPredicted RBP32.2■■■□□ 2.75
CTCF-203ENST00000566078 CHST7Q9NS84 486 aa32.2■■■□□ 2.75
CTCF-203ENST00000566078 URI1O94763 535 aaPredicted RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 CPB1P15086 417 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 RABGGTBP53611 331 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 C9orf50Q5SZB4 431 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 RSPO2Q6UXX9 243 aaPredicted RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 DDX53Q86TM3 631 aaKnown RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 PIK3R5Q8WYR1 880 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 CLP1Q92989 425 aaKnown RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 KCNK16Q96T55 309 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 CSNK1G1Q9HCP0 422 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 ABI2Q9NYB9 513 aaPredicted RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 PACSIN2Q9UNF0 486 aaPredicted RBP32.19■■■□□ 2.74
CTCF-203ENST00000566078 HYOU1Q9Y4L1 999 aa32.19■■■□□ 2.74
CTCF-203ENST00000566078 LCHNA4D1U4 455 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 SIGLEC16A6NMB1 481 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 MYO1FO00160 1098 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 PAPSS1O43252 624 aaPredicted RBP32.18■■■□□ 2.74
CTCF-203ENST00000566078 KRT3P12035 628 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 SCUBE3Q8IX30 993 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 KCTD13Q8WZ19 329 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 ABCB6Q9NP58 842 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 DMAP1Q9NPF5 467 aaPredicted RBP32.18■■■□□ 2.74
CTCF-203ENST00000566078 MTRRQ9UBK8 725 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 AMFRQ9UKV5 643 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 CEP290O15078 2479 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 LAMA2P24043 3122 aaKnown RBP32.18■■■□□ 2.74
CTCF-203ENST00000566078 TMEM191CA6NGB0 347 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 C2CD2LO14523 706 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 GLUD2P49448 558 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 ADIGQ0VDE8 80 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 OLFML1Q6UWY5 402 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 NT5DC3Q86UY8 548 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 ZDHHC17Q8IUH5 632 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 PIWIL1Q96J94 861 aaKnown RBP32.18■■■□□ 2.74
CTCF-203ENST00000566078 PGLYRP2Q96PD5 576 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 TLR10Q9BXR5 811 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 ALG6Q9Y672 507 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 CDY1Q9Y6F8 540 aa32.18■■■□□ 2.74
CTCF-203ENST00000566078 GREB1Q4ZG55 1949 aa32.17■■■□□ 2.74
CTCF-203ENST00000566078 ZNF638Q14966 1978 aaKnown RBP32.17■■■□□ 2.74
CTCF-203ENST00000566078 CYP2F1P24903 491 aa32.17■■■□□ 2.74
CTCF-203ENST00000566078 JOSD2Q8TAC2 188 aa32.17■■■□□ 2.74
CTCF-203ENST00000566078 FUBP3Q96I24 572 aaKnown RBP eCLIP32.17■■■□□ 2.74
CTCF-203ENST00000566078 LRRC4Q9HBW1 653 aa32.17■■■□□ 2.74
CTCF-203ENST00000566078 PCDHB5Q9Y5E4 795 aa32.17■■■□□ 2.74
CTCF-203ENST00000566078 SLC6A3Q01959 620 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 DSG1Q02413 1049 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 CFAP221Q4G0U5 840 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 PAPD7Q5XG87 772 aaKnown RBP32.16■■■□□ 2.74
CTCF-203ENST00000566078 TNS4Q8IZW8 715 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 FBXO22Q8NEZ5 403 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 CLEC4CQ8WTT0 213 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 RNPC3Q96LT9 517 aaKnown RBP32.16■■■□□ 2.74
CTCF-203ENST00000566078 UBXN6Q9BZV1 441 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 BACE2Q9Y5Z0 518 aa32.16■■■□□ 2.74
CTCF-203ENST00000566078 FGF18O76093 207 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 COMTP21964 271 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 DNA2P51530 1060 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 SIX6OS1Q8N1H7 587 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 IP6K2Q9UHH9 426 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 HHLA1C9JL84 531 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 PROSCO94903 275 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 URODP06132 367 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 RPL17P18621 184 aaKnown RBP32.15■■■□□ 2.74
CTCF-203ENST00000566078 RFC1P35251 1148 aaPredicted RBP32.15■■■□□ 2.74
CTCF-203ENST00000566078 AMPD2Q01433 879 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 KRT17Q04695 432 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 GPR17Q13304 367 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 GPRIN1Q7Z2K8 1008 aa32.15■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms