RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 KCTD13Q8WZ19 329 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 CPXM1Q96SM3 734 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 TCF25Q9BQ70 676 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 LPIN3Q9BQK8 851 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 C17orf80Q9BSJ5 609 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 PBX4Q9BYU1 374 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 UBXN6Q9BZV1 441 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 CSNK1G1Q9HCP0 422 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 NGRNQ9NPE2 291 aaKnown RBP13.52□□□□□ -0.25
CLK3-214ENST00000564096 PARVAQ9NVD7 372 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 HSFX1Q9UBD0 423 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 MTUS1Q9ULD2 1270 aa13.52□□□□□ -0.25
CLK3-214ENST00000564096 PDE4DIPQ5VU43 2346 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 E5RJQ4 531 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 ATMINO43313 823 aaPredicted RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 ERBB2P04626 1255 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 MYOGP15173 224 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 RRM1P23921 792 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 OR1D2P34982 312 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SCNN1AP37088 669 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 GRIK1P39086 918 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 ARHGAP25P42331 645 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 NOP2P46087 812 aaKnown RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 GABRB2P47870 512 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 RGS7P49802 495 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 ERVK-21P61565 698 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 RPL10AP62906 217 aaKnown RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 PDE12Q6L8Q7 609 aaKnown RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 PAQR9Q6ZVX9 377 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 LRRTM3Q86VH5 581 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SYCE1Q8N0S2 351 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 WDTC1Q8N5D0 677 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 TRIM58Q8NG06 486 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 ZNF564Q8TBZ8 553 aaPredicted RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 POF1BQ8WVV4 589 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 C8orf48Q96LL4 319 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 CEP295NLQ96MC4 621 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 PGLYRP2Q96PD5 576 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SEPT5Q99719 369 aaPredicted RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 TRIM62Q9BVG3 475 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SELENOOQ9BVL4 669 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 NUP85Q9BW27 656 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SLC4A5Q9BY07 1137 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 LACRTQ9GZZ8 138 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 SLC28A3Q9HAS3 691 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 TMLHEQ9NVH6 421 aa13.51□□□□□ -0.25
CLK3-214ENST00000564096 AFF4Q9UHB7 1163 aaKnown RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 YBX2Q9Y2T7 364 aaKnown RBP13.51□□□□□ -0.25
CLK3-214ENST00000564096 FAM170AA1A519 330 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 WDR27A2RRH5 827 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 RCCD1A6NED2 376 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 F8VP50 259 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 ZNF500O60304 480 aaPredicted RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 RPL17P18621 184 aaKnown RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 ELF1P32519 619 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 TUFMP49411 452 aaKnown RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 ADIGQ0VDE8 80 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 PTP4A2Q12974 167 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 PLD1Q13393 1074 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 RAB33AQ14088 237 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 ZNF268Q14587 947 aaPredicted RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 TCEAL1Q15170 157 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 MGAT5BQ3V5L5 792 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 FAM102AQ5T9C2 384 aaPredicted RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 CYP4A22Q5TCH4 519 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 PLPP4Q5VZY2 271 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 OR6B2Q6IFH4 312 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 PMF1Q6P1K2 205 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 DCUN1D2Q6PH85 259 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 ELMSAN1Q6PJG2 1045 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 TMEM110Q86TL2 294 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 SCN4BQ8IWT1 228 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 GOLGA1Q92805 767 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 ARHGEF26Q96DR7 871 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 C16orf45Q96MC5 204 aaPredicted RBP13.5□□□□□ -0.25
CLK3-214ENST00000564096 SMOQ99835 787 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 LMAN2LQ9H0V9 348 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 NKX2-4Q9H2Z4 354 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 RXFP1Q9HBX9 757 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 EHD2Q9NZN4 543 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 CYTH4Q9UIA0 394 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 IRAK3Q9Y616 596 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 VWA8A3KMH1 1905 aa13.5□□□□□ -0.25
CLK3-214ENST00000564096 GOLGA8SH3BPF8 625 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 TEX28O15482 410 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 MTA2O94776 668 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 LCP1P13796 627 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 CYP2F1P24903 491 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 RPL34P49207 117 aaKnown RBP13.49□□□□□ -0.25
CLK3-214ENST00000564096 TKTL1P51854 596 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 HADHBP55084 474 aaKnown RBP13.49□□□□□ -0.25
CLK3-214ENST00000564096 SMAD3P84022 425 aaKnown RBP13.49□□□□□ -0.25
CLK3-214ENST00000564096 ADCY1Q08828 1119 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 GPM6BQ13491 265 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 VEPH1Q14D04 833 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 PRPF38BQ5VTL8 546 aaKnown RBP13.49□□□□□ -0.25
CLK3-214ENST00000564096 PLEKHA7Q6IQ23 1121 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 C11orf63Q6NUN7 778 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 CHRDL2Q6WN34 429 aa13.49□□□□□ -0.25
CLK3-214ENST00000564096 RNF19BQ6ZMZ0 732 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms