RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MSNP26038 577 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 GPR3P46089 330 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 HTR3AP46098 478 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 CCT8P50990 548 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ARPC4P59998 168 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 DPTQ07507 201 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 GRM1Q13255 1194 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SP140Q13342 867 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 MPP3Q13368 585 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 PICALMQ13492 652 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 BECN1Q14457 450 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SEMA3AQ14563 771 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 IMMTQ16891 758 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 SHROOM1Q2M3G4 852 aaPredicted RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 MST1LQ2TV78 715 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 CAVIN4Q5BKX8 364 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 MUM1L1Q5H9M0 696 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 TOR2AQ5JU69 321 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ATF7IPQ6VMQ6 1270 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SPATA21Q7Z572 469 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 XYLT1Q86Y38 959 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 RPAP2Q8IXW5 612 aaPredicted RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 TEX11Q8IYF3 940 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 CEP57L1Q8IYX8 460 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ZNF276Q8N554 614 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SPERTQ8NA61 448 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 USP38Q8NB14 1042 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 MGARPQ8TDB4 240 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 LARP4BQ92615 738 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 NRBF2Q96F24 287 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 RBM18Q96H35 190 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 HIC2Q96JB3 615 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 PPP1R9BQ96SB3 815 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 DCLRE1CQ96SD1 692 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 UQCC2Q9BRT2 126 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ACE2Q9BYF1 805 aaPredicted RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 TSGA10Q9BZW7 698 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 NSRP1Q9H0G5 558 aaKnown RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 GREM2Q9H772 168 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 BCO1Q9HAY6 547 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 STARD7Q9NQZ5 370 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SMYD2Q9NRG4 433 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 GPRC5BQ9NZH0 403 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SCOCQ9UIL1 159 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 LAMP5Q9UJQ1 280 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ZBTB21Q9ULJ3 1066 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 DUSP12Q9UNI6 340 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SORCS3Q9UPU3 1222 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 AGTPBP1Q9UPW5 1226 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ATP11BQ9Y2G3 1177 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 EPN1Q9Y6I3 576 aaPredicted RBP5.54□□□□□ -1.52
VPS35-205ENST00000563984 GAKO14976 1311 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 SOS1Q07889 1333 aaPredicted RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 GOLGA6L10A6NI86 522 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 TSPY2A6NKD2 308 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 PLOD2O00469 737 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 MCF2LO15068 1137 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 FYB1O15117 783 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 TTI1O43156 1089 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 REC8O95072 547 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 APBB3O95704 486 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 TSPY3P0CV98 308 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 TSPY8P0CW00 308 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 PCP11498 1178 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 MGAT1P26572 445 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 KRT20P35900 424 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 MTHFRP42898 656 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 RAD52P43351 418 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 RXRGP48443 463 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 CTCFP49711 727 aaPredicted RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 FLT3LGP49771 235 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 NEK3P51956 506 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 BLVRAP53004 296 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 SLC5A3P53794 718 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 ATXN1P54253 815 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 TSPY1Q01534 308 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 PRKG2Q13237 762 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 EMC10Q5UCC4 262 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 IL31Q6EBC2 164 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 ANGPTL8Q6UXH0 198 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 ZNF627Q7L945 461 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 DGLUCYQ7Z3D6 616 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 IQCA1Q86XH1 822 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 DDX42Q86XP3 938 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS35-205ENST00000563984 VPS52Q8N1B4 723 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 SYNE4Q8N205 404 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 TRIML2Q8N7C3 387 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 CCDC148Q8NFR7 591 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 OR7D4Q8NG98 312 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 MDM1Q8TC05 714 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 CPT1CQ8TCG5 803 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 LENG9Q96B70 501 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 CNDP2Q96KP4 475 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 TSGA13Q96PP4 275 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 FAM193BQ96PV7 902 aaPredicted RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 KCNH6Q9H252 994 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 MRPL46Q9H2W6 279 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 BRD9Q9H8M2 597 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 ATP6V0A4Q9HBG4 840 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 SPON1Q9HCB6 807 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms