RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CSRP2Q16527 193 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 SLC39A12Q504Y0 691 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 ARHGAP15Q53QZ3 475 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 SYNPOQ8N3V7 929 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 GLIS3Q8NEA6 775 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 TTC8Q8TAM2 541 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 BPIFB1Q8TDL5 484 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 FAM212AQ96EL1 285 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 NAP1L5Q96NT1 182 aaPredicted RBP14.99□□□□□ -0.01
LDLR-213ENST00000560502 SEPT5Q99719 369 aaPredicted RBP14.99□□□□□ -0.01
LDLR-213ENST00000560502 ASB7Q9H672 318 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 SEMA4GQ9NTN9 838 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 INTS13Q9NVM9 706 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 DSEQ9UL01 958 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 EXOC7Q9UPT5 735 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 ZKSCAN5Q9Y2L8 839 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 ATG2BQ96BY7 2078 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 MYO16Q9Y6X6 1858 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 DPYSL4O14531 572 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 ADRB1P08588 477 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 NMT1P30419 496 aaKnown RBP14.98□□□□□ -0.01
LDLR-213ENST00000560502 PBX1P40424 430 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 MTIF2P46199 727 aaKnown RBP14.98□□□□□ -0.01
LDLR-213ENST00000560502 ACOT2P49753 483 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 POU5F1Q01860 360 aaKnown RBP14.98□□□□□ -0.01
LDLR-213ENST00000560502 TNK2Q07912 1038 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 VEPH1Q14D04 833 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 MAN2A1Q16706 1144 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 PRR23CQ6ZRP0 262 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 TMC6Q7Z403 805 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 TMEM150AQ86TG1 271 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 LRRTM3Q86VH5 581 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 SLC9A9Q8IVB4 645 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 NELFCDQ8IXH7 590 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 C12orf56Q8IXR9 622 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 C2orf15Q8WU43 125 aaKnown RBP14.98□□□□□ -0.01
LDLR-213ENST00000560502 ACCSQ96QU6 501 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 TUBGCP2Q9BSJ2 902 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 SLC46A2Q9BY10 475 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 FGFBP2Q9BYJ0 223 aa14.98□□□□□ -0.01
LDLR-213ENST00000560502 METTL14Q9HCE5 456 aaKnown RBP14.98□□□□□ -0.01
LDLR-213ENST00000560502 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.98□□□□□ -0.011e-13■□□□□ 8.8
LDLR-213ENST00000560502 CYB561D2O14569 222 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 TPM1P09493 284 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 HAPLN1P10915 354 aaPredicted RBP14.97□□□□□ -0.01
LDLR-213ENST00000560502 TAF6P49848 677 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 SMARCB1Q12824 385 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 ITPRIPL2Q3MIP1 535 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 MGAT5BQ3V5L5 792 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 ZC2HC1CQ53FD0 456 aaPredicted RBP14.97□□□□□ -0.01
LDLR-213ENST00000560502 HSP90AA4PQ58FG1 418 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 FKBP15Q5T1M5 1219 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 WSCD1Q658N2 575 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 HEATR6Q6AI08 1181 aaKnown RBP14.97□□□□□ -0.01
LDLR-213ENST00000560502 CRELD2Q6UXH1 353 aaPredicted RBP14.97□□□□□ -0.01
LDLR-213ENST00000560502 CCDC186Q7Z3E2 898 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 WDR5BQ86VZ2 330 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 EFCAB13Q8IY85 973 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 CCDC112Q8NEF3 446 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 SPPL2BQ8TCT7 592 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 CHFRQ96EP1 664 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 FAM83CQ9BQN1 747 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 SMG9Q9H0W8 520 aaKnown RBP14.97□□□□□ -0.01
LDLR-213ENST00000560502 HPS4Q9NQG7 708 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 DPP3Q9NY33 737 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 TAB2Q9NYJ8 693 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 ZMYM5Q9UJ78 669 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 USP24Q9UPU5 2620 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 ANAPC1Q9H1A4 1944 aa14.97□□□□□ -0.01
LDLR-213ENST00000560502 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 PRPF6O94906 941 aaKnown RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 NR3C1P04150 777 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 HMGA1P17096 107 aaKnown RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 NR2F2P24468 414 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 MSNP26038 577 aaKnown RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 HOXD13P35453 343 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 TBX2Q13207 712 aaPredicted RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 SLFN12LQ6IEE8 588 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 PKN3Q6P5Z2 889 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 METTL23Q86XA0 190 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 CMTM8Q8IZV2 173 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 THEM5Q8N1Q8 247 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 FAM160A2Q8N612 972 aaPredicted RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 GCNAQ96QF7 691 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 IKZF4Q9H2S9 585 aa14.96□□□□□ -0.01
LDLR-213ENST00000560502 AGO2Q9UKV8 859 aaKnown RBP14.96□□□□□ -0.01
LDLR-213ENST00000560502 ESPNB1AK53 854 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 MAPK13O15264 365 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 TGFB1I1O43294 461 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 EXTL3O43909 919 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 FOXD2O60548 495 aaPredicted RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 F11P03951 625 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 EPB41P11171 864 aaKnown RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 ADSSP30520 456 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 CDR1P51861 262 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 ADAM9Q13443 819 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 CCDC40Q4G0X9 1142 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 TMEM196Q5HYL7 178 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 FSTL4Q6MZW2 842 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 SYCP3Q8IZU3 236 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms