RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 TAS2R14Q9NYV8 317 aa6.79□□□□□ -1.32
SPG11-221ENST00000560299 JRKLQ9Y4A0 524 aa6.79□□□□□ -1.32
SPG11-221ENST00000560299 PAXBP1Q9Y5B6 917 aa6.79□□□□□ -1.32
SPG11-221ENST00000560299 MRPL42Q9Y6G3 142 aaKnown RBP6.79□□□□□ -1.32
SPG11-221ENST00000560299 NCANO14594 1321 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 RCCD1A6NED2 376 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 GRXCR1A8MXD5 290 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 XPO1O14980 1071 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 SART1O43290 800 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 BUB1O43683 1085 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 B4GALT3O60512 393 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 AP1G2O75843 785 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 SOD2P04179 222 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 URODP06132 367 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 CFHP08603 1231 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 CCDC130P13994 396 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 IGFBP6P24592 240 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 SSTR3P32745 418 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 PLA2G4AP47712 749 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 GABRB2P47870 512 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 GLUD2P49448 558 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 HADHBP55084 474 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 GSCP56915 257 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 PDE4CQ08493 712 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 PDCLQ13371 301 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 TUBB2AQ13885 445 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 MRPL58Q14197 206 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 PKDCCQ504Y2 493 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 PLEKHA7Q6IQ23 1121 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DNAJC24Q6P3W2 148 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DCUN1D2Q6PH85 259 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 VSTM1Q6UX27 236 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 SYT10Q6XYQ8 523 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 MMS22LQ6ZRQ5 1243 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 MON1BQ7L1V2 547 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DAAM2Q86T65 1068 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 TMEM110Q86TL2 294 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DDX53Q86TM3 631 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 PALB2Q86YC2 1186 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 RNF168Q8IYW5 571 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 FUKQ8N0W3 1084 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 SLC39A11Q8N1S5 342 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 EFCAB3Q8N7B9 438 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 C3orf20Q8ND61 904 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 OLIG1Q8TAK6 271 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 ZNF564Q8TBZ8 553 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 SPPL2BQ8TCT7 592 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 SLC35F5Q8WV83 523 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 RIN2Q8WYP3 895 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 MRPL38Q96DV4 380 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 PCED1BQ96HM7 432 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 GAS2L1Q99501 681 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 CDCA3Q99618 268 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 CDX2Q99626 313 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 NAPGQ99747 312 aaPredicted RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 ZSWIM1Q9BR11 485 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 TUBB2BQ9BVA1 445 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 TRIM62Q9BVG3 475 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 SELENOOQ9BVL4 669 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 NUP85Q9BW27 656 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 PACSIN1Q9BY11 444 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 RHOBTB2Q9BYZ6 727 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 ZCWPW1Q9H0M4 648 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 LRRC4Q9HBW1 653 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 PNPLA8Q9NP80 782 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 NGRNQ9NPE2 291 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 CRTAC1Q9NQ79 661 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.78□□□□□ -1.32
SPG11-221ENST00000560299 MRPL17Q9NRX2 175 aaKnown RBP6.78□□□□□ -1.32
SPG11-221ENST00000560299 MARCH5Q9NX47 278 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DNAI1Q9UI46 699 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 PCDHB5Q9Y5E4 795 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 BACE2Q9Y5Z0 518 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 DUSP10Q9Y6W6 482 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 COL6A3P12111 3177 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 MYO9BQ13459 2157 aa6.78□□□□□ -1.32
SPG11-221ENST00000560299 GBF1Q92538 1859 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 BDP1A6H8Y1 2624 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 MYBPHLA2RUH7 354 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 SIGLEC16A6NMB1 481 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 F8W810 466 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 TRIM66O15016 1216 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 ATP2C2O75185 946 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 MTA2O94776 668 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 FBXO21O94952 628 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 MOCS3O95396 460 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 KRT3P12035 628 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 CPB1P15086 417 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 BDNFP23560 247 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 RRM1P23921 792 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 SCNN1AP37088 669 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 GRIK1P39086 918 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 PBX3P40426 434 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 SLC1A1P43005 524 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 RABGGTBP53611 331 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 MAP3K7CLP57077 242 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 GPR17Q13304 367 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 GRIN2CQ14957 1233 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 ACAP1Q15027 740 aa6.77□□□□□ -1.33
SPG11-221ENST00000560299 PSMD5Q16401 504 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms