RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MAP1SQ66K74 1059 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 C1orf228Q6PIY5 440 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 BBS12Q6ZW61 710 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 PRPF39Q86UA1 669 aaKnown RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 C12orf29Q8N999 325 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 MZB1Q8WU39 189 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 DCAKDQ8WVC6 231 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 SERAC1Q96JX3 654 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 FOXP3Q9BZS1 431 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 CXCL16Q9H2A7 254 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 PTPRHQ9HD43 1115 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ZMYND8Q9ULU4 1186 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 EFNA5P52803 228 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 YARSP54577 528 aaKnown RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 ARL4CP56559 192 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 YWHAEP62258 255 aaKnown RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 METTL7BQ6UX53 244 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 AEBP2Q6ZN18 517 aaPredicted RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 FBXO16Q8IX29 292 aaPredicted RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 CPB2Q96IY4 423 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 ZNF570Q96NI8 536 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 GPR20Q99678 358 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 CDT1Q9H211 546 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 PDGFCQ9NRA1 345 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 USP18Q9UMW8 372 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 C15orf41Q9Y2V0 281 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 USH1CQ9Y6N9 552 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 SSC5DA1L4H1 1573 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 MGAMO43451 1857 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 DOCK1Q14185 1865 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 LACTBL1A8MY62 500 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 M0QYV0 167 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 MICAL2O94851 1124 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 ATP11AP98196 1134 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 SETDB1Q15047 1291 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 FAM102AQ5T9C2 384 aaPredicted RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 IER5Q5VY09 327 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 CDCA2Q69YH5 1023 aaPredicted RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 JADE1Q6IE81 842 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 MPZL3Q6UWV2 235 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 ZNF518BQ9C0D4 1074 aa13.49□□□□□ -0.25
LDLR-207ENST00000558013 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.49□□□□□ -0.25
LDLR-207ENST00000558013 SMG5Q9UPR3 1016 aaKnown RBP13.49□□□□□ -0.25
LDLR-207ENST00000558013 A0A0G2JND7 137 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 NOP56O00567 594 aaKnown RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 USP2O75604 605 aaPredicted RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 TNNC2P02585 160 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CYP3A5P20815 502 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 PTPN7P35236 360 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 RGS7P49802 495 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 NR1H3Q13133 447 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 DPYSL3Q14195 570 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 KBTBD12Q3ZCT8 623 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ZNF667Q5HYK9 610 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 FAM160B1Q5W0V3 765 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ZBTB8OSQ8IWT0 167 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 GRAMD1AQ96CP6 724 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 TBC1D10AQ9BXI6 508 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 RNPEPQ9H4A4 650 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ACSS3Q9H6R3 686 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 NR2E3Q9Y5X4 410 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 BRCA2P51587 3418 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 H0Y3Z8 333 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 SOCS7O14512 581 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CLNS1AP54105 237 aaKnown RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 FAAP100Q0VG06 881 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 EFCAB12Q6NXP0 572 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ADGRD1Q6QNK2 874 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 POTEAQ6S8J7 498 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 GADL1Q6ZQY3 521 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 POLNQ7Z5Q5 900 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ATP11CQ8NB49 1132 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CHST13Q8NET6 341 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ANKRD36BP1Q96IX9 119 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 HEXIM2Q96MH2 286 aaKnown RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 LPIN3Q9BQK8 851 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 SPATC1LQ9H0A9 340 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 TXNRD2Q9NNW7 524 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 SLC24A2Q9UI40 661 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 TCRBV9S1A1TA0A576 114 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 KBTBD13C9JR72 458 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 SKAP2O75563 359 aaPredicted RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 UPP2O95045 317 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 KRT7P08729 469 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 PROZP22891 400 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 EDNRBP24530 442 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CDH6P55285 790 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 PTPN11Q06124 597 aaPredicted RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 HADHQ16836 314 aaKnown RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 Q3C1V9 767 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 WDR78Q5VTH9 848 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 DARS2Q6PI48 645 aaKnown RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 CYP4V2Q6ZWL3 525 aaPredicted RBP13.48□□□□□ -0.25
LDLR-207ENST00000558013 NLRP9Q7RTR0 991 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CCDC125Q86Z20 511 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 KCNN1Q92952 543 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 SPATA33Q96N06 139 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 PLCD4Q9BRC7 762 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 CYLDQ9NQC7 956 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 FBXO6Q9NRD1 293 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms