RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRPM4Q8TD43 1214 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 DCAKDQ8WVC6 231 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 TMEM176AQ96HP8 235 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 CYTH2Q99418 400 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 PRMT7Q9NVM4 692 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 USP18Q9UMW8 372 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 IQANK1A0A1B0GTG1 560 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 INO80B-WBP1J3KQ70 363 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 HBP1O60381 514 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 USP2O75604 605 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 TMEM63AO94886 807 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SLC25A27O95847 323 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 TROVE2P10155 538 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 MCF2P10911 925 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 VDRP11473 427 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SSTR1P30872 391 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 RAP1GAPP47736 663 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 ZNF143P52747 638 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 IRX3P78415 501 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 ROR1Q01973 937 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 DPYSL3Q14195 570 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 NOMO1Q15155 1222 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 FAM187BQ17R55 369 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 MSS51Q4VC12 460 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 EEF1DP3Q658K8 133 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 UNC45BQ8IWX7 931 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 C1orf127Q8N9H9 656 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 BANPQ8N9N5 519 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SPOCK2Q92563 424 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 RSRC1Q96IZ7 334 aaKnown RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 WDR83Q9BRX9 315 aaKnown RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 INO80BQ9C086 356 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SDCBP2Q9H190 292 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SMARCAD1Q9H4L7 1026 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 CXorf56Q9H5V9 222 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 ASB7Q9H672 318 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SLCO1B3Q9NPD5 702 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 SAE1Q9UBE0 346 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 TJP2Q9UDY2 1190 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 RPL26L1Q9UNX3 145 aaKnown RBP14.12□□□□□ -0.15
SHMT2-222ENST00000555774 C15orf41Q9Y2V0 281 aa14.12□□□□□ -0.15
SHMT2-222ENST00000555774 TRAFD1O14545 582 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-222ENST00000555774 ARIH2O95376 493 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 CXCL8P10145 99 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 RBP3P10745 1247 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 OTOAQ7RTW8 1153 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 EMC1Q8N766 993 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 ANKRD27Q96NW4 1050 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 ADPGKQ9BRR6 497 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 CNPY3Q9BT09 278 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 ELOVL4Q9GZR5 314 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 SAR1AQ9NR31 198 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 KIAA1257Q9ULG3 409 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 STK38LQ9Y2H1 464 aa14.11□□□□□ -0.15
SHMT2-222ENST00000555774 CHADO15335 359 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 BANF1O75531 89 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 CD48P09326 243 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 GPD1P21695 349 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 VGLL4Q14135 290 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 BBS9Q3SYG4 887 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 FAM71DQ8N9W8 422 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 STAMBPL1Q96FJ0 436 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 NLRP4Q96MN2 994 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 GPRC5DQ9NZD1 345 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 LOC102724159A0A0B4J2E5 919 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 CFAP69A5D8W1 941 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 M0QYV0 167 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 SOCS7O14512 581 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 IRF6O14896 467 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 B4GALT5O43286 388 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 FAM155BO75949 473 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 ANP32DO95626 131 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 STAU1O95793 577 aaKnown RBP14.1□□□□□ -0.15
SHMT2-222ENST00000555774 NFICP08651 508 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 GPD2P43304 727 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 PHKA2P46019 1235 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 OSTNP61366 133 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 GAD2Q05329 585 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 EFTUD2Q15029 972 aaKnown RBP eCLIP14.1□□□□□ -0.154e-8■■■■■ 44
SHMT2-222ENST00000555774 PWP2Q15269 919 aaKnown RBP14.1□□□□□ -0.15
SHMT2-222ENST00000555774 HSDL1Q3SXM5 330 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 CHSY1Q86X52 802 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 CCDC125Q86Z20 511 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 CEP120Q8N960 986 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 SPATA18Q8TC71 538 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 USP6NLQ92738 828 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 N4BP2L2Q92802 583 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-222ENST00000555774 TUBB6Q9BUF5 446 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 SMYD3Q9H7B4 428 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 PNPLA8Q9NP80 782 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 PCSK1NQ9UHG2 260 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 TRIM33Q9UPN9 1127 aa14.1□□□□□ -0.15
SHMT2-222ENST00000555774 LACTBL1A8MY62 500 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 IL1BP01584 269 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 CCNG1P51959 295 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 CDH8P55286 799 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 BASP1P80723 227 aaKnown RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 KCNJ11Q14654 390 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 STILQ15468 1287 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms