RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 GOLGA6L22H0YM25 854 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 AP1G2O75843 785 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 FGFR1OPO95684 399 aaKnown RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 TRIM21P19474 475 aaKnown RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ADORA2BP29275 332 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 WEE1P30291 646 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 AVPR2P30518 371 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 GDI1P31150 447 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 MLF2Q15773 248 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ZNF394Q53GI3 561 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ASTLQ6HA08 431 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 MON1AQ86VX9 555 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 MFSD6LQ8IWD5 586 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ZMIZ2Q8NF64 920 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 DNASE1L2Q92874 299 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 USP13Q92995 863 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 CNOT6LQ96LI5 555 aaKnown RBP14.56□□□□□ -0.08
SHMT2-219ENST00000555563 LRRC3BQ96PB8 259 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 SMOQ99835 787 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 BRD9Q9H8M2 597 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 TRPC7Q9HCX4 862 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ZMYM5Q9UJ78 669 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ANAPC1Q9H1A4 1944 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 ZNF638Q14966 1978 aaKnown RBP14.55□□□□□ -0.08
SHMT2-219ENST00000555563 DPYSL4O14531 572 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 PMM2O15305 246 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 BEST1O76090 585 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 FAM200BP0CF97 657 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 CCDC192P0DO97 292 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 AOC1P19801 751 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 RFX1P22670 979 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 AVPR1AP37288 418 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 SLC5A3P53794 718 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 FCHO2Q0JRZ9 810 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 KCNH2Q12809 1159 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 IFRD2Q12894 506 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-219ENST00000555563 LRMPQ12912 555 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 CUL2Q13617 745 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 NUP93Q8N1F7 819 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 RIN3Q8TB24 985 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 SLC22A12Q96S37 553 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 OBP2AQ9NY56 170 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 EHD2Q9NZN4 543 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 CCL26Q9Y258 94 aa14.55□□□□□ -0.08
SHMT2-219ENST00000555563 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHMT2-219ENST00000555563 HELZP42694 1942 aaKnown RBP14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TRIOO75962 3097 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TRAV19A0A0A6YYK7 116 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 C2orf78A6NCI8 922 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 SOBPA7XYQ1 873 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 ARNTLO00327 626 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TNFRSF10BO14763 440 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 ZNF263O14978 683 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 P4HA2O15460 535 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 PI15O43692 258 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 AFPP02771 609 aaKnown RBP14.54□□□□□ -0.08
SHMT2-219ENST00000555563 CKMP06732 381 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 CLCN5P51795 746 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 RAD23BP54727 409 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 MAP3K7CLP57077 242 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 STARD6P59095 220 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TAF10Q12962 218 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 SLC44A4Q53GD3 710 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 PHLDB3Q6NSJ2 640 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TPRG1Q6ZUI0 275 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 YAF2Q8IY57 180 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 TTC39CQ8N584 583 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 CELF5Q8N6W0 485 aaKnown RBP14.54□□□□□ -0.08
SHMT2-219ENST00000555563 SLC4A11Q8NBS3 891 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 SCAMP5Q8TAC9 235 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 LMO3Q8TAP4 145 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 BPIFB1Q8TDL5 484 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 IRF7Q92985 503 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 CYFIP2Q96F07 1278 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 ZFYVE19Q96K21 471 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 NT5C1BQ96P26 610 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 HNRNPABQ99729 332 aaKnown RBP14.54□□□□□ -0.08
SHMT2-219ENST00000555563 FOXQ1Q9C009 403 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 FAM124BQ9H5Z6 455 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-219ENST00000555563 KIF9Q9HAQ2 790 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 CSNK1G1Q9HCP0 422 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 HEBP1Q9NRV9 189 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 GCNT4Q9P109 453 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 MYO16Q9Y6X6 1858 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 ZDBF2Q9HCK1 2354 aa14.54□□□□□ -0.08
SHMT2-219ENST00000555563 ZNF840PA6NDX5 716 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 STK25O00506 426 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 CHADO15335 359 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 RTN3O95197 1032 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-219ENST00000555563 TBXAS1P24557 533 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-219ENST00000555563 YWHAQP27348 245 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 PRKCQQ04759 706 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 CETN1Q12798 172 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 ZNF268Q14587 947 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-219ENST00000555563 PPP1R26Q5T8A7 1209 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-219ENST00000555563 RBM43Q6ZSC3 357 aaKnown RBP14.53□□□□□ -0.08
SHMT2-219ENST00000555563 CLEC20AQ6ZU45 233 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 GPRIN1Q7Z2K8 1008 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 IRF2BP1Q8IU81 584 aa14.53□□□□□ -0.08
SHMT2-219ENST00000555563 UBR7Q8N806 425 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms