RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PSMC3P17980 439 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 ANXA13P27216 316 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 SOX9P48436 509 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 TNK2Q07912 1038 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 MLF2Q15773 248 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 MON1AQ86VX9 555 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 UNC93AQ86WB7 457 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 CMTM8Q8IZV2 173 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 ARL14EPQ8N8R7 260 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 TTC16Q8NEE8 873 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 LMO3Q8TAP4 145 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 MRPS31Q92665 395 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 KAT5Q92993 513 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 TNIP3Q96KP6 325 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 METTL14Q9HCE5 456 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 CISHQ9NSE2 258 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 RWDD2AQ9UIY3 292 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 HCN4Q9Y3Q4 1203 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 ANAPC1Q9H1A4 1944 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 ZNF638Q14966 1978 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 ARNTLO00327 626 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 TNFRSF10BO14763 440 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 ZNF263O14978 683 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 TRIM66O15016 1216 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 GLULP15104 373 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 AOC1P19801 751 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 RAD23BP54727 409 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 MAP3K7CLP57077 242 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 ZXDBP98169 803 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 KCNH2Q12809 1159 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 TAF10Q12962 218 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 WDR44Q5JSH3 913 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 FOXR2Q6PJQ5 311 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 TPRG1Q6ZUI0 275 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 DENND5BQ6ZUT9 1274 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 GPRIN1Q7Z2K8 1008 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 CREBRFQ8IUR6 639 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 SLC4A11Q8NBS3 891 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 CCDC150Q8NCX0 1101 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 GBP4Q96PP9 640 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 TTLL2Q9BWV7 592 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 NT5C1AQ9BXI3 368 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 RNF38Q9H0F5 515 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 GCNT4Q9P109 453 aa12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 CHORDC1Q9UHD1 332 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-208ENST00000554165 ZNF840PA6NDX5 716 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 HHLA1C9JL84 531 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 DPYSL4O14531 572 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 SCAMP3O14828 347 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 ABL1P00519 1130 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 RFX1P22670 979 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 AVPR1AP37288 418 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 CLCN5P51795 746 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 SLC5A3P53794 718 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 STARD6P59095 220 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 APBA1Q02410 837 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 FCHO2Q0JRZ9 810 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 TCF15Q12870 199 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 CUL2Q13617 745 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 HSP90AA4PQ58FG1 418 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 PPP1R26Q5T8A7 1209 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 TRIM68Q6AZZ1 485 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 ARHGEF19Q8IW93 802 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 YAF2Q8IY57 180 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 MLKLQ8NB16 471 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 DEPDC1BQ8WUY9 529 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 CYFIP2Q96F07 1278 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 SMARCD1Q96GM5 515 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 HEXIM2Q96MH2 286 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 HNRNPABQ99729 332 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 DMAP1Q9NPF5 467 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 GKN1Q9NS71 199 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 TDP1Q9NUW8 608 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 GTSE1Q9NYZ3 720 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 UXTQ9UBK9 157 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 TICRRQ7Z2Z1 1910 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 ATP8B3O60423 1300 aa12.28□□□□□ -0.44
CCDC88C-208ENST00000554165 CACNA1IQ9P0X4 2223 aa12.27□□□□□ -0.44
CCDC88C-208ENST00000554165 NUP210Q8TEM1 1887 aaPredicted RBP12.27□□□□□ -0.44
CCDC88C-208ENST00000554165 MYH10P35580 1976 aa12.27□□□□□ -0.44
CCDC88C-208ENST00000554165 OTOL1A6NHN0 477 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM170BA6NMN3 283 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM200BP0CF97 657 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 ARSAP15289 507 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 TARSP26639 723 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 YWHAQP27348 245 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 WEE1P30291 646 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 MARSP56192 900 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 PFKPQ01813 784 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 UBXN2BQ14CS0 331 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 PHLDB3Q6NSJ2 640 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 RRAGAQ7L523 313 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CCDC105Q8IYK2 499 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 NUP93Q8N1F7 819 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CELF5Q8N6W0 485 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 UBR7Q8N806 425 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 PJA1Q8NG27 643 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 BPIFB1Q8TDL5 484 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 FBXO32Q969P5 355 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms