RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ATP5HO75947 161 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 ETS1P14921 441 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 THPOP40225 353 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 MCL1Q07820 350 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 NFIL3Q16649 462 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 DCAF4L1Q3SXM0 396 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 IPMKQ8NFU5 416 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 DTX3LQ8TDB6 740 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 LRGUKQ96M69 825 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 CTNNAL1Q9UBT7 734 aa16.96■□□□□ 0.3
CUX1-213ENST00000549414 CES2O00748 559 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 CYB561D2O14569 222 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 CLGNO14967 610 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 ACADSBP45954 432 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 VCPP55072 806 aaKnown RBP16.95■□□□□ 0.3
CUX1-213ENST00000549414 ZACNQ401N2 412 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 GANCQ8TET4 914 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 PDHA1P08559 390 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 OR1G1P47890 313 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 HSDL1Q3SXM5 330 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 DENND1BQ6P3S1 775 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 KIAA0319LQ8IZA0 1049 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 PIDD1Q9HB75 910 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 NOL3O60936 208 aaKnown RBP16.95■□□□□ 0.3
CUX1-213ENST00000549414 NFICP08651 508 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 STX3Q13277 289 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 PDK1Q15118 436 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 LENG9Q96B70 501 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 ZBTB10Q96DT7 871 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 GCNAQ96QF7 691 aa16.95■□□□□ 0.3
CUX1-213ENST00000549414 C17orf102A2RUQ5 167 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 TADA2AO75478 443 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 EGFRP00533 1210 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 PCSK1P29120 753 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 RFC1P35251 1148 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 RIOX2Q8IUF8 465 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 GTF3C2Q8WUA4 911 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 KLRG1Q96E93 195 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 HES6Q96HZ4 224 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 AVENQ9NQS1 362 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 ABI2Q9NYB9 513 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 ABCC6O95255 1503 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 SPATA31C2B4DYI2 1134 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 MICAL2O94851 1124 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 LGALS2P05162 132 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 PAPOLAP51003 745 aaKnown RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 TTC30AQ86WT1 665 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 AP4E1Q9UPM8 1137 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 DUOX1Q9NRD9 1551 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 CFAP73A6NFT4 308 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 MAP3K7O43318 606 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ZNF862O60290 1169 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 MIPP30301 263 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 RAD23BP54727 409 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 FBXO47Q5MNV8 452 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ARID3BQ8IVW6 561 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 ADGRF2Q8IZF7 708 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ATPAF2Q8N5M1 289 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 STAMBPL1Q96FJ0 436 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 PAFAH2Q99487 392 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 BARX2Q9UMQ3 279 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 E5RJQ4 531 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 S100BP04271 92 aaPredicted RBP16.94■□□□□ 0.3
CUX1-213ENST00000549414 MMP14P50281 582 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 CPT1AP50416 773 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 NCKAP1LP55160 1127 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 MAMLD1Q13495 774 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 BMPR2Q13873 1038 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 KIF19Q2TAC6 998 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ZBTB41Q5SVQ8 909 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 SLC25A41Q8N5S1 370 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 RMDN1Q96DB5 314 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 SHCBP1LQ9BZQ2 653 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 FAM129AQ9BZQ8 928 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ERVK-5Q9HDB9 667 aa16.94■□□□□ 0.3
CUX1-213ENST00000549414 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 CASTOR2A6NHX0 329 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 IGF2BP3O00425 579 aaKnown RBP eCLIP16.93■□□□□ 0.3
CUX1-213ENST00000549414 TRPA1O75762 1119 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 LUC7L3O95232 432 aaKnown RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 FLT3P36888 993 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 MAP3K7CLP57077 242 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 ALKBH8Q96BT7 664 aaKnown RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 SLC40A1Q9NP59 571 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 PDGFCQ9NRA1 345 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 C20orf96Q9NUD7 363 aaPredicted RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 SKIP12755 728 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 TAC1P20366 129 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 SREBF2Q12772 1141 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 ZNF235Q14590 738 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 C15orf59Q2T9L4 293 aaPredicted RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 PRAMEF19Q5SWL8 479 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 TTC8Q8TAM2 541 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 ADAM32Q8TC27 787 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 TFB1MQ8WVM0 346 aaKnown RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 CLEC4DQ8WXI8 215 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 WWP1Q9H0M0 922 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 SLC38A7Q9NVC3 462 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 NINJ2Q9NZG7 142 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 RPS6KL1Q9Y6S9 549 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms