RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ERLIN2O94905 339 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 ALBP02768 609 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CAPNS1P04632 268 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CEACAM1P13688 526 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 PTPN2P17706 415 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CSRP1P21291 193 aaKnown RBP7.18□□□□□ -1.26
LIMA1-204ENST00000549064 ALAS2P22557 587 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 HOXA6P31267 233 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 KPNA1P52294 538 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-204ENST00000549064 JAK3P52333 1124 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 NPEPPSP55786 919 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 NLRP12P59046 1061 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CREB5Q02930 508 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 GRIK3Q13003 919 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 PON2Q15165 354 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 UVSSAQ2YD98 709 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 UAP1L1Q3KQV9 507 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 PLK5Q496M5 336 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 LRCH2Q5VUJ6 765 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 ANO5Q75V66 913 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 MIER3Q7Z3K6 550 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 RNF149Q8NC42 400 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CSGALNACT1Q8TDX6 532 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 PRPF31Q8WWY3 499 aaKnown RBP7.18□□□□□ -1.26
LIMA1-204ENST00000549064 KLHL6Q8WZ60 621 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 SMARCD2Q92925 531 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 ZNF669Q96BR6 464 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CSRNP2Q9H175 543 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 DUSP15Q9H1R2 295 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CXCL16Q9H2A7 254 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 OSGEPQ9NPF4 335 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 BARHL2Q9NY43 387 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 GIT1Q9Y2X7 761 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 CDY1Q9Y6F8 540 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 NAV2Q8IVL1 2488 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 MYO16Q9Y6X6 1858 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 ADAMTS9Q9P2N4 1935 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 SPAARA0A1B0GVQ0 90 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 HEPACAM2A8MVW5 462 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 SPECC1L-ADORA2AF8WAN1 911 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 CDX4O14627 284 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 MOSPD3O75425 235 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 NPTXRO95502 500 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 CAVIN2O95810 425 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 LRG1P02750 347 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 PRB1P04280 392 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 SFNP31947 248 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 CIITAP33076 1130 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 MAP2K3P46734 347 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 LAMTOR4Q0VGL1 99 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 TUSC3Q13454 348 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 DGKKQ5KSL6 1271 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 TMEM201Q5SNT2 666 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 CDCP2Q5VXM1 449 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 C20orf204Q6ZNR8 217 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 C8orf86Q6ZUL3 223 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 EXOC6Q8TAG9 804 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 ZSCAN18Q8TBC5 510 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 DEPDC1BQ8WUY9 529 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 PSPC1Q8WXF1 523 aaKnown RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 SLC5A5Q92911 643 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 ZFYVE19Q96K21 471 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 ZC3H10Q96K80 434 aaKnown RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 TEKT3Q9BXF9 490 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 TRIM6Q9C030 488 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 TMEM9BQ9NQ34 198 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 GTSE1Q9NYZ3 720 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 ANKFY1Q9P2R3 1169 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 MTRRQ9UBK8 725 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 G3BP2Q9UN86 482 aaKnown RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 KIAA1549LQ6ZVL6 1849 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 NUP210Q8TEM1 1887 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-204ENST00000549064 PLXNB3Q9ULL4 1909 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 SHROOM3Q8TF72 1996 aa7.17□□□□□ -1.26
LIMA1-204ENST00000549064 BCLAF3A2AJT9 711 aaKnown RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 MYBPHLA2RUH7 354 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 EIF4E1BA6NMX2 242 aaKnown RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 I3L4J1 428 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 DDX3YO15523 660 aaKnown RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 B4GALT5O43286 388 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 PSMD10O75832 226 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 MYL4P12829 197 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 ARF4P18085 180 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 MCM5P33992 734 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 LIFRP42702 1097 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 ETF1P62495 437 aaKnown RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 SLC7A5Q01650 507 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 ROR1Q01973 937 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 SCAPQ12770 1279 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 TEAD2Q15562 447 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 NOTUMQ6P988 496 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 PDZD4Q76G19 769 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 FERMT3Q86UX7 667 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 MFSD6LQ8IWD5 586 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 TMTC2Q8N394 836 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 SYNPOQ8N3V7 929 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 FAM13CQ8NE31 585 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 CCDC136Q96JN2 1154 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 TMEM87BQ96K49 555 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 RIT2Q99578 217 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms