RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	SEZ6	Q53EL9	994 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	CYP4A22	Q5TCH4	519 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	FBXO41	Q8TF61	875 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	SPATA33	Q96N06	139 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	PAFAH2	Q99487	392 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ETNK1	Q9HBU6	452 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	MLXIPL	Q9NP71	852 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	GGA3	Q9NZ52	723 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	AGAP1	Q9UPQ3	857 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	COL1A2	P08123	1366 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	COL11A1	P12107	1806 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	ERBB2	P04626	1255 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	INHBA	P08476	426 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	RPA3	P35244	121 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	DNAJC3	Q13217	504 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	MKRN4P	Q13434	485 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	NOMO1	Q15155	1222 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	EFCAB12	Q6NXP0	572 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	DARS2	Q6PI48	645 aa	Known RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	LVRN	Q6Q4G3	990 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM228A	Q86W67	206 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	CHSY1	Q86X52	802 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	SPATA18	Q8TC71	538 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZNF75CP	Q92670	426 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	TRIM55	Q9BYV6	548 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	CDT1	Q9H211	546 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	BTBD7	Q9P203	1132 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZNF180	Q9UJW8	692 aa		13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	MTO1	Q9Y2Z2	717 aa	Known RBP	13.63	□□□□□ -0.23
CPSF7-223	ENST00000544669	SPAG7	O75391	227 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	KRT37	O76014	449 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	TCF4	P15884	667 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	OSBP	P22059	807 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	MIP	P30301	263 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	SSTR3	P32745	418 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	CCNG1	P51959	295 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZNF200	P98182	395 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	MBTD1	Q05BQ5	628 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	PDE4C	Q08493	712 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	INCA1	Q0VD86	236 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	LAMC2	Q13753	1193 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	LY6K	Q17RY6	165 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	WASHC2D	Q5SRD0	308 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	LCLAT1	Q6UWP7	414 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	GLIS1	Q8NBF1	620 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	FBXO36	Q8NEA4	188 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	MTBP	Q96DY7	904 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM84A	Q96KN4	292 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	HEXIM2	Q96MH2	286 aa	Known RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	KLC2	Q9H0B6	622 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	METTL5	Q9NRN9	209 aa	Known RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	DERA	Q9Y315	318 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669		A0A0G2JLL6	359 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	DPYSL4	O14531	572 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	KLF11	O14901	512 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	MICAL2	O94851	1124 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	STAG3L1	P0CL83	205 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	ETS1	P14921	441 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	GPD2	P43304	727 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	GPX6	P59796	221 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	CDK18	Q07002	472 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	VGLL4	Q14135	290 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	CGB2	Q6NT52	195 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	SCARA5	Q6ZMJ2	495 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM47E	Q6ZV65	393 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	BZW1	Q7L1Q6	419 aa	Known RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	FASTKD5	Q7L8L6	764 aa	Known RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	BANP	Q8N9N5	519 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	SHCBP1	Q8NEM2	672 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	STK32A	Q8WU08	396 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	RTP4	Q96DX8	246 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	NLRP4	Q96MN2	994 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	TSPAN18	Q96SJ8	248 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	CPXM1	Q96SM3	734 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	NT5C1A	Q9BXI3	368 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	CALN1	Q9BXU9	219 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	IQCG	Q9H095	443 aa	Known RBP	13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	MANSC1	Q9H8J5	431 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	PLEKHA5	Q9HAU0	1116 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	LNPEP	Q9UIQ6	1025 aa		13.62	□□□□□ -0.23
CPSF7-223	ENST00000544669	BCLAF3	A2AJT9	711 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZBTB42	B2RXF5	422 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669		M0QYV0	167 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	ECM2	O94769	699 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	LUC7L3	O95232	432 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	ELF1	P32519	619 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	SCNN1A	P37088	669 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	DYNLT1	P63172	113 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	KCNJ2	P63252	427 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	BASP1	P80723	227 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	SARNP	P82979	210 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	KRT81	Q14533	505 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	TMEM132D	Q14C87	1099 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.61	□□□□□ -0.23	1e-15	■■■■■ 80.2
CPSF7-223	ENST00000544669	DBN1	Q16643	649 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms