RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CRYBG2Q8N1P7 616 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 RIN3Q8TB24 985 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 ATOH1Q92858 354 aaPredicted RBP15.73■□□□□ 0.11
USP28-204ENST00000537642 DHTKD1Q96HY7 919 aaPredicted RBP15.73■□□□□ 0.11
USP28-204ENST00000537642 TWNKQ96RR1 684 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 SLC22A12Q96S37 553 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 MED10Q9BTT4 135 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 NIF3L1Q9GZT8 377 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 TRPC7Q9HCX4 862 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 TDP1Q9NUW8 608 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 PIAS3Q9Y6X2 628 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 PIEZO1Q92508 2521 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 ATP8B3O60423 1300 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 BIN1O00499 593 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 MAN2B1O00754 1011 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 STX10O60499 249 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 CCDC130P13994 396 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 PPP1R2P41236 205 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 INCA1Q0VD86 236 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 FZD5Q13467 585 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 ZNF268Q14587 947 aaPredicted RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 ANGPT1Q15389 498 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 DCAF17Q5H9S7 520 aaPredicted RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 FBXL13Q8NEE6 735 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 CSGALNACT1Q8TDX6 532 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 CYP2S1Q96SQ9 504 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 KCNK16Q96T55 309 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 NELL2Q99435 816 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 DUSP9Q99956 384 aaKnown RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 KIF9Q9HAQ2 790 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 CYP3A43Q9HB55 503 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 GCNT4Q9P109 453 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 MRPS17Q9Y2R5 130 aaKnown RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 HELZP42694 1942 aaKnown RBP15.72■□□□□ 0.11
USP28-204ENST00000537642 MYO15AQ9UKN7 3530 aa15.72■□□□□ 0.11
USP28-204ENST00000537642 DMDP11532 3685 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 PATJQ8NI35 1801 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TRAV19A0A0A6YYK7 116 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 C2orf78A6NCI8 922 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 SOX9P48436 509 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 MLLT6P55198 1093 aaPredicted RBP15.71■□□□□ 0.11
USP28-204ENST00000537642 PLCB2Q00722 1185 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TNK2Q07912 1038 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 CBWD6Q4V339 395 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 CBWD3Q5JTY5 395 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 CBWD5Q5RIA9 395 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TCERG1LQ5VWI1 586 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 KLHL10Q6JEL2 608 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TTI2Q6NXR4 508 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 ARL14EPQ8N8R7 260 aaPredicted RBP15.71■□□□□ 0.11
USP28-204ENST00000537642 C12orf29Q8N999 325 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 CCDC150Q8NCX0 1101 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TTC8Q8TAM2 541 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 SLC2A14Q8TDB8 520 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 WHAMMQ8TF30 809 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 NELFBQ8WX92 580 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 FAM3CQ92520 227 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 CLDN23Q96B33 292 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 SMARCD1Q96GM5 515 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 GKN1Q9NS71 199 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 KRT82Q9NSB4 513 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 RAB20Q9NX57 234 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 GTSE1Q9NYZ3 720 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 EHD2Q9NZN4 543 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 TRPM5Q9NZQ8 1165 aa15.71■□□□□ 0.11
USP28-204ENST00000537642 ARMCX3Q9UH62 379 aaPredicted RBP15.71■□□□□ 0.11
USP28-204ENST00000537642 NDRG2Q9UN36 371 aaKnown RBP15.71■□□□□ 0.11
USP28-204ENST00000537642 ZNF840PA6NDX5 716 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 TNFRSF10BO14763 440 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 CILPO75339 1184 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 AP1G2O75843 785 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 USP17L7P0C7H9 530 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 CD58P19256 250 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 MRE11P49959 708 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 KPNA1P52294 538 aaPredicted RBP15.7■□□□□ 0.1
USP28-204ENST00000537642 TAF10Q12962 218 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 FILIP1Q7Z7B0 1213 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 ALYREFQ86V81 257 aaKnown RBP15.7■□□□□ 0.1
USP28-204ENST00000537642 C1orf210Q8IVY1 113 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 NUP93Q8N1F7 819 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 ZMIZ2Q8NF64 920 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 TATDN2Q93075 761 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 SLC35C1Q96A29 364 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 CEP63Q96MT8 703 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 SMOQ99835 787 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 FAM83CQ9BQN1 747 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 NT5C1AQ9BXI3 368 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 C8orf33Q9H7E9 229 aaPredicted RBP15.7■□□□□ 0.1
USP28-204ENST00000537642 DMAP1Q9NPF5 467 aaPredicted RBP15.7■□□□□ 0.1
USP28-204ENST00000537642 FAM49BQ9NUQ9 324 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 THG1LQ9NWX6 298 aaKnown RBP15.7■□□□□ 0.1
USP28-204ENST00000537642 CTNND2Q9UQB3 1225 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 COQ4Q9Y3A0 265 aa15.7■□□□□ 0.1
USP28-204ENST00000537642 NCAM2O15394 837 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 BEST1O76090 585 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 CKMP06732 381 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 HDCP19113 662 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 YWHAQP27348 245 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 MAGEA9P43362 315 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms