RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 PARP6Q2NL67 630 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 FAM71DQ8N9W8 422 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 ERP27Q96DN0 273 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 SMARCAD1Q9H4L7 1026 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 VRTNQ9H8Y1 702 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 XPO7Q9UIA9 1087 aaKnown RBP16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 STK38LQ9Y2H1 464 aa16.78■□□□□ 0.28
CHMP1A-202ENST00000535997 HGSO14964 777 aaPredicted RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 HBP1O60381 514 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 ENDOD1O94919 500 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 ITGBL1O95965 494 aaPredicted RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 GPD2P43304 727 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 ZNF143P52747 638 aaPredicted RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 SEPT7Q16181 437 aaKnown RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 EFCAB12Q6NXP0 572 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 CDR2LQ86X02 465 aaPredicted RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 SPATA18Q8TC71 538 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 MZB1Q8WU39 189 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 L3MBTL3Q96JM7 780 aaPredicted RBP16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 SPATA33Q96N06 139 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 CYTH2Q99418 400 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 SDCBP2Q9H190 292 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 VPS11Q9H270 941 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 CYLDQ9NQC7 956 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 TRIM33Q9UPN9 1127 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 ANK1P16157 1881 aa16.77■□□□□ 0.28
CHMP1A-202ENST00000535997 TCRBV7S3A2A0A539 114 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 LACTBL1A8MY62 500 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 MICAL2O94851 1124 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 ZBTB7AO95365 584 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 SLC25A27O95847 323 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 P4HA1P13674 534 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 HIRAP54198 1017 aaPredicted RBP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 ATP11AP98196 1134 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 DHX37Q8IY37 1157 aaKnown RBP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 TMEM192Q8IY95 271 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 BANPQ8N9N5 519 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 ZNF398Q8TD17 642 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 TWNKQ96RR1 684 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 WDR83Q9BRX9 315 aaKnown RBP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 CALN1Q9BXU9 219 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 ELOVL4Q9GZR5 314 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 LRMDAQ9H2I8 198 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 MINDY3Q9H8M7 445 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 PRMT7Q9NVM4 692 aaPredicted RBP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 PPP1R1BQ9UD71 204 aaPredicted RBP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 L3MBTL1Q9Y468 752 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 UTRNP46939 3433 aa16.77■□□□□ 0.27
CHMP1A-202ENST00000535997 WDR90Q96KV7 1748 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 GPR25O00155 361 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TMEM63AO94886 807 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ANP32DO95626 131 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 GJB1P08034 283 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 NFICP08651 508 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 VDRP11473 427 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 RASSF2P50749 326 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TNFAIP2Q03169 654 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 RNASELQ05823 741 aaKnown RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 POU5F1BQ06416 359 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 CBLBQ13191 982 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 BBS9Q3SYG4 887 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 OTOAQ7RTW8 1153 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 CXorf38Q8TB03 319 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 DCAKDQ8WVC6 231 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 HSPH1Q92598 858 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 INPP5DQ92835 1189 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ADAM33Q9BZ11 813 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ASB7Q9H672 318 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ITGB3P05106 788 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 IQCF3P0C7M6 154 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 STAG3L1P0CL83 205 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 IRX3P78415 501 aaPredicted RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 BASP1P80723 227 aaKnown RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TFDP2Q14188 446 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TAF5Q15542 800 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 FAM187BQ17R55 369 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 SLC45A4Q5BKX6 768 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 FYB2Q5VWT5 728 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 AGGF1Q8N302 714 aaeCLIP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ZNF276Q8N554 614 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TCP10LQ8TDR4 215 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TRAPPC12Q8WVT3 735 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 C10orf82Q8WW14 230 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 THOC1Q96FV9 657 aaKnown RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ZNF668Q96K58 619 aaPredicted RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 HEXIM2Q96MH2 286 aaKnown RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 TMEM237Q96Q45 408 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 ADPGKQ9BRR6 497 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 CNPY3Q9BT09 278 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 MIS12Q9H081 205 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 FAM124BQ9H5Z6 455 aaPredicted RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 SMYD3Q9H7B4 428 aa16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 NOP53Q9NZM5 478 aaKnown RBP16.76■□□□□ 0.27
CHMP1A-202ENST00000535997 MGAMO43451 1857 aa16.75■□□□□ 0.27
CHMP1A-202ENST00000535997 C2CD2LO14523 706 aa16.75■□□□□ 0.27
CHMP1A-202ENST00000535997 ORC1Q13415 861 aa16.75■□□□□ 0.27
CHMP1A-202ENST00000535997 EFTUD2Q15029 972 aaKnown RBP eCLIP16.75■□□□□ 0.278e-7■■■■■ 33.2
CHMP1A-202ENST00000535997 FAM47CQ5HY64 1035 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms