RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DNAI2Q9GZS0 605 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 NRDE2Q9H7Z3 1164 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 STK39Q9UEW8 545 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TUBGCP4Q9UGJ1 667 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 KIAA1257Q9ULG3 409 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 INPP5FQ9Y2H2 1132 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 FAN1Q9Y2M0 1017 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 BZW2Q9Y6E2 419 aaKnown RBP7.9□□□□□ -1.14
CD44-228ENST00000528455 ADARB2-AS1A8MUL3 147 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 RNF225M0QZC1 329 aaPredicted RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 M0QZQ0 153 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 PODXLO00592 558 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 HUS1O60921 280 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 TADA2AO75478 443 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CYP11A1P05108 521 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CELA2BP08218 269 aaPredicted RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 MAPK1P28482 360 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 OR1G1P47890 313 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 LHX1P48742 406 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 AARSP49588 968 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-228ENST00000528455 GUCY2FP51841 1108 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 ADKP55263 362 aaKnown RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 BCAR1P56945 870 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 JAM2P57087 298 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 NOP14P78316 857 aaKnown RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 DEFB103AP81534 67 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 BTG3Q14201 252 aaPredicted RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 ZNF385CQ66K41 422 aaPredicted RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 CD300LGQ6UXG3 332 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 RRAGAQ7L523 313 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CCDC186Q7Z3E2 898 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 ZNF438Q7Z4V0 828 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 IRF2BP2Q7Z5L9 587 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 UNC93AQ86WB7 457 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 ARHGEF19Q8IW93 802 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 LRRC8AQ8IWT6 810 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CRYBG2Q8N1P7 616 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 TMEM86AQ8N2M4 240 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 LRRC43Q8N309 656 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 TOP6BLQ8N6T0 577 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 SPC24Q8NBT2 197 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 APPL2Q8NEU8 664 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 PPM1EQ8WY54 764 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 SHC3Q92529 594 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 SENP8Q96LD8 212 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 KREMEN1Q96MU8 473 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 SPAG5Q96R06 1193 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 MMS19Q96T76 1030 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 DNAJC7Q99615 494 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 NIF3L1Q9GZT8 377 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CWH43Q9H720 699 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CERS4Q9HA82 394 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 RC3H2Q9HBD1 1191 aaKnown RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 APOBEC3GQ9HC16 384 aaKnown RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 NLRC4Q9NPP4 1024 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 ZNHIT6Q9NWK9 470 aaKnown RBP7.89□□□□□ -1.15
CD44-228ENST00000528455 DSEQ9UL01 958 aa7.89□□□□□ -1.15
CD44-228ENST00000528455 CYB561D2O14569 222 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GABRDO14764 452 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 EPHB6O15197 1021 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 OIP5O43482 229 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 WEE2P0C1S8 567 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 EPXP11678 715 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 FERP16591 822 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ACO1P21399 889 aaKnown RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 IBSPP21815 317 aaPredicted RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 SOX5P35711 763 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GNL1P36915 607 aaPredicted RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 PRKCIP41743 596 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ASPAP45381 313 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 TNNC1P63316 161 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 APBA1Q02410 837 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 TAP1Q03518 808 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ELAVL2Q12926 359 aaKnown RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 ADGRE1Q14246 886 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 PTPN21Q16825 1174 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ARHGAP44Q17R89 818 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 SOWAHAQ2M3V2 549 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 TIGD5Q53EQ6 642 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 HS1BP3Q53T59 392 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 SFMBT2Q5VUG0 894 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 SPOPLQ6IQ16 392 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 FAM117BQ6P1L5 589 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GJB7Q6PEY0 223 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 WDR59Q6PJI9 974 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 KCNT2Q6UVM3 1135 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 TMC7Q7Z402 723 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 TMCO2Q7Z6W1 182 aaPredicted RBP7.88□□□□□ -1.15
CD44-228ENST00000528455 TMTC1Q8IUR5 882 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GPR65Q8IYL9 337 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 FIBCD1Q8N539 461 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 UBR7Q8N806 425 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ARNTL2Q8WYA1 636 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 FAM84AQ96KN4 292 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 YME1L1Q96TA2 773 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 PAAF1Q9BRP4 392 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GPR88Q9GZN0 384 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 GOLGA2P5Q9HBQ8 144 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 CISHQ9NSE2 258 aa7.88□□□□□ -1.15
CD44-228ENST00000528455 ABHD10Q9NUJ1 306 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms