RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ADD2P35612 726 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 RABGGTBP53611 331 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 HSD11B2P80365 405 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 MC2RQ01718 297 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 G3BP1Q13283 466 aaKnown RBP eCLIP8.53□□□□□ -1.04
LSM1-202ENST00000520286 PTCHD3Q3KNS1 767 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 TCTN3Q6NUS6 607 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 MAATS1Q7Z4T9 603 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 PCGF5Q86SE9 256 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 LRRTM4Q86VH4 590 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 SLC44A2Q8IWA5 706 aaPredicted RBP8.53□□□□□ -1.04
LSM1-202ENST00000520286 SP8Q8IXZ3 490 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 COLGALT2Q8IYK4 626 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 SPARTQ8N0X7 666 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 SYT8Q8NBV8 401 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 SCAMP5Q8TAC9 235 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 DNAJB14Q8TBM8 379 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 GRAMD1AQ96CP6 724 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 ZSWIM1Q9BR11 485 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 DDX23Q9BUQ8 820 aaKnown RBP8.53□□□□□ -1.04
LSM1-202ENST00000520286 PTDSS2Q9BVG9 487 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 CXorf36Q9H7Y0 433 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 RIC8AQ9NPQ8 531 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 PRDM8Q9NQV8 689 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 IFT80Q9P2H3 777 aaPredicted RBP8.53□□□□□ -1.04
LSM1-202ENST00000520286 FEM1BQ9UK73 627 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 NEU2Q9Y3R4 380 aa8.53□□□□□ -1.04
LSM1-202ENST00000520286 CAPN14A8MX76 684 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 E7ENX8 843 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ERN1O75460 977 aaKnown RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 RHOBTB3O94955 611 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 GPANK1O95872 356 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ARP10275 920 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 FGFR4P22455 802 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 APOBEC3AP31941 199 aaPredicted RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 BCAT1P54687 386 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 RNASE9P60153 205 aaKnown RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 HHEXQ03014 270 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 TAP2Q03519 686 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 GPS1Q13098 491 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ATP1A4Q13733 1029 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 FAM110CQ1W6H9 321 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ATPAF1Q5TC12 328 aaPredicted RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 FOXR2Q6PJQ5 311 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 SIMC1Q8NDZ2 872 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ASB12Q8WXK4 309 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 SEC62Q99442 399 aaKnown RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 TRIM5Q9C035 493 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 SEPSECSQ9HD40 501 aaKnown RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 NDRG4Q9ULP0 352 aaKnown RBP8.52□□□□□ -1.05
LSM1-202ENST00000520286 DUSP10Q9Y6W6 482 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 ZNF536O15090 1300 aa8.52□□□□□ -1.05
LSM1-202ENST00000520286 NPEPPSL1A6NEC2 478 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 OR2W5A6NFC9 320 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ANXA6P08133 673 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ANXA11P50995 505 aaKnown RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 PAPOLAP51003 745 aaKnown RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 PRKAA2P54646 552 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 SCAPQ12770 1279 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 CUL4BQ13620 913 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 PKN1Q16512 942 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ARHGAP40Q5TG30 622 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 NAIF1Q69YI7 327 aaPredicted RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 OGFOD2Q6N063 350 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 RETSATQ6NUM9 610 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 TMPRSS9Q7Z410 1059 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 POLNQ7Z5Q5 900 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 SGMS1Q86VZ5 419 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 HERC6Q8IVU3 1022 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 NRSN1Q8IZ57 195 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.51□□□□□ -1.05
LSM1-202ENST00000520286 SLC30A5Q8TAD4 765 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 CPT1CQ8TCG5 803 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 AFG1LQ8WV93 481 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 THAP4Q8WY91 577 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 RSC1A1Q92681 617 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ZNF668Q96K58 619 aaPredicted RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 MNTQ99583 582 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 TAF1DQ9H5J8 278 aaPredicted RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 GBA2Q9HCG7 927 aaPredicted RBP8.51□□□□□ -1.05
LSM1-202ENST00000520286 PPP4R1LQ9P1A2 415 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 DNAJB11Q9UBS4 358 aa8.51□□□□□ -1.05
LSM1-202ENST00000520286 ZNF185O15231 689 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 CD3EAPO15446 510 aaKnown RBP8.5□□□□□ -1.05
LSM1-202ENST00000520286 FOXS1O43638 330 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 BDNFP23560 247 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 KLRK1P26718 216 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 OCA2Q04671 838 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 EFR3AQ14156 821 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 E2F2Q14209 437 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 ABLIM2Q6H8Q1 611 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 RGS7BPQ6MZT1 257 aaPredicted RBP8.5□□□□□ -1.05
LSM1-202ENST00000520286 HTR3DQ70Z44 454 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 RSRC2Q7L4I2 434 aaKnown RBP8.5□□□□□ -1.05
LSM1-202ENST00000520286 CLNKQ7Z7G1 428 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 TMTC1Q8IUR5 882 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 Q8NA96 180 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 GPR87Q9BY21 358 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 RNF181Q9P0P0 153 aa8.5□□□□□ -1.05
LSM1-202ENST00000520286 TTBK1Q5TCY1 1321 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms