RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NECAB3Q96P71 396 aaPredicted RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 KCNK16Q96T55 309 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 SMOQ99835 787 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 TTLL2Q9BWV7 592 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 LSM14BQ9BX40 385 aaKnown RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 ATXN3LQ9H3M9 355 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ZNF334Q9HCZ1 680 aaPredicted RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 PNPLA8Q9NP80 782 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 SIX2Q9NPC8 291 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 IGSF9Q9P2J2 1179 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 DNAJC12Q9UKB3 198 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 MAGED2Q9UNF1 606 aaPredicted RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 DENND4AQ7Z401 1863 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 CUL9Q8IWT3 2517 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 A0A1W2PRU2 124 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 RNF225M0QZC1 329 aaPredicted RBP15.1■□□□□ 0.01
NUP54-216ENST00000514901 MOSPD3O75425 235 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 F11P03951 625 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 CEBPBP17676 345 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 SP100P23497 879 aaPredicted RBP15.1■□□□□ 0.01
NUP54-216ENST00000514901 CCR2P41597 374 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 CACNA2D1P54289 1103 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 MAP3K7CLP57077 242 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 ZNF445P59923 1031 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 MTMR3Q13615 1198 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 CNGA2Q16280 664 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 ARHGAP44Q17R89 818 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 DPY19L2P1Q6NXN4 242 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 GJB7Q6PEY0 223 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 GAREM2Q75VX8 874 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 MTSS1LQ765P7 747 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 NPAS3Q8IXF0 933 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 SHKBP1Q8TBC3 707 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 SHC3Q92529 594 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 ERGIC2Q96RQ1 377 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 FBXO44Q9H4M3 255 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 IL21Q9HBE4 155 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 RTN4Q9NQC3 1192 aaKnown RBP15.1■□□□□ 0.01
NUP54-216ENST00000514901 TMEM30AQ9NV96 361 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 IL37Q9NZH6 218 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 HESX1Q9UBX0 185 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 LIMD1Q9UGP4 676 aa15.1■□□□□ 0.01
NUP54-216ENST00000514901 TNFRSF10BO14763 440 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 MED7O43513 233 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 SERPINC1P01008 464 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 UCHL3P15374 230 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 YWHAQP27348 245 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 WEE1P30291 646 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 BCAT1P54687 386 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 BPIFB4P59827 614 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 TEAD2Q15562 447 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 LCLAT1Q6UWP7 414 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 CLEC20AQ6ZU45 233 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 RNF135Q8IUD6 432 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 ZMIZ2Q8NF64 920 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 ING5Q8WYH8 240 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 OVCA2Q8WZ82 227 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 MRPS31Q92665 395 aaKnown RBP15.09■□□□□ 0.01
NUP54-216ENST00000514901 MCRS1Q96EZ8 462 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 PCMTD1Q96MG8 357 aaPredicted RBP15.09■□□□□ 0.01
NUP54-216ENST00000514901 SLITRK1Q96PX8 696 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 COL25A1Q9BXS0 654 aaPredicted RBP15.09■□□□□ 0.01
NUP54-216ENST00000514901 STK33Q9BYT3 514 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 TASP1Q9H6P5 420 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 TRPM5Q9NZQ8 1165 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 TSPAN16Q9UKR8 245 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 SIK3Q9Y2K2 1263 aa15.09■□□□□ 0.01
NUP54-216ENST00000514901 ANHXE9PGG2 379 aa15.08■□□□□ 0
NUP54-216ENST00000514901 O00370 1275 aa15.08■□□□□ 0
NUP54-216ENST00000514901 FOXN3O00409 490 aaPredicted RBP15.08■□□□□ 0
NUP54-216ENST00000514901 BEST1O76090 585 aa15.08■□□□□ 0
NUP54-216ENST00000514901 PFKLP17858 780 aa15.08■□□□□ 0
NUP54-216ENST00000514901 USP8P40818 1118 aa15.08■□□□□ 0
NUP54-216ENST00000514901 PDE6CP51160 858 aa15.08■□□□□ 0
NUP54-216ENST00000514901 APBA1Q02410 837 aa15.08■□□□□ 0
NUP54-216ENST00000514901 PTK2Q05397 1052 aa15.08■□□□□ 0
NUP54-216ENST00000514901 BST2Q10589 180 aaKnown RBP15.08■□□□□ 0
NUP54-216ENST00000514901 DRAP1Q14919 205 aaPredicted RBP15.08■□□□□ 0
NUP54-216ENST00000514901 SYCP1Q15431 976 aa15.08■□□□□ 0
NUP54-216ENST00000514901 MEA1Q16626 185 aa15.08■□□□□ 0
NUP54-216ENST00000514901 PDZD8Q8NEN9 1154 aa15.08■□□□□ 0
NUP54-216ENST00000514901 NEK11Q8NG66 645 aa15.08■□□□□ 0
NUP54-216ENST00000514901 TFAP2BQ92481 460 aa15.08■□□□□ 0
NUP54-216ENST00000514901 E2F7Q96AV8 911 aa15.08■□□□□ 0
NUP54-216ENST00000514901 NAA15Q9BXJ9 866 aaKnown RBP15.08■□□□□ 0
NUP54-216ENST00000514901 SLITRK6Q9H5Y7 841 aa15.08■□□□□ 0
NUP54-216ENST00000514901 CD320Q9NPF0 282 aa15.08■□□□□ 0
NUP54-216ENST00000514901 NCANO14594 1321 aa15.08■□□□□ 0
NUP54-216ENST00000514901 GREB1Q4ZG55 1949 aa15.07■□□□□ 0
NUP54-216ENST00000514901 A0A1B0GTH6 734 aa15.07■□□□□ 0
NUP54-216ENST00000514901 FAM92AA1XBS5 289 aa15.07■□□□□ 0
NUP54-216ENST00000514901 TNFRSF10AO00220 468 aa15.07■□□□□ 0
NUP54-216ENST00000514901 SETSIPP0DME0 302 aa15.07■□□□□ 0
NUP54-216ENST00000514901 GJA1P17302 382 aa15.07■□□□□ 0
NUP54-216ENST00000514901 GNA15P30679 374 aa15.07■□□□□ 0
NUP54-216ENST00000514901 SLC5A3P53794 718 aa15.07■□□□□ 0
NUP54-216ENST00000514901 USP46P62068 366 aa15.07■□□□□ 0
NUP54-216ENST00000514901 TAF10Q12962 218 aa15.07■□□□□ 0
NUP54-216ENST00000514901 RAPGEF1Q13905 1077 aa15.07■□□□□ 0
NUP54-216ENST00000514901 GOLGA7BQ2TAP0 167 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms