RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ELMOD1Q8N336 334 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 LNX1Q8TBB1 728 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 NTPCRQ9BSD7 190 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CRISPLD1Q9H336 500 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 MKS1Q9NXB0 559 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 KCND2Q9NZV8 630 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 TMEM63CQ9P1W3 806 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 BECN2A8MW95 431 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 C2CD4DB7Z1M9 353 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MBTPS2O43462 519 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC34A2O95436 690 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ODC1P11926 461 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PLA2G4AP47712 749 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 VAMP7P51809 220 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 UBXN2BQ14CS0 331 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC80Q76M96 950 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PLEKHO2Q8TD55 490 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SP7Q8TDD2 431 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 USP33Q8TEY7 942 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 KAT5Q92993 513 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 P2RX5Q93086 422 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 KCNK16Q96T55 309 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PLVAPQ9BX97 442 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 EPC1Q9H2F5 836 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PTPRHQ9HD43 1115 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 TAB2Q9NYJ8 693 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 HMGXB4Q9UGU5 601 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ARMCX3Q9UH62 379 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PRELID1Q9Y255 219 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ANKRD62A6NC57 917 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC38A8A6NNN8 435 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 F8VP50 259 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 CTIFO43310 598 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 GNL1P36915 607 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 RBP5P82980 135 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ADAM15Q13444 863 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 TXNDC8Q6A555 127 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SV2AQ7L0J3 742 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 LRRTM3Q86VH5 581 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MIB1Q86YT6 1006 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 DRAXINQ8NBI3 349 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC150Q8NCX0 1101 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 UBA3Q8TBC4 463 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 KIAA1524Q8TCG1 905 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SAMD11Q96NU1 681 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 TMLHEQ9NVH6 421 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 INTS13Q9NVM9 706 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SEL1LQ9UBV2 794 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MCM8Q9UJA3 840 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 GOLGA6L10A0A0M3HER8 536 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 LRRIQ3A6PVS8 624 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 HLA-DRAP01903 254 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MUTP22033 750 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SOX9P48436 509 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PXNP49023 591 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MXI1P50539 228 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF131P52739 623 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 PPP3CAQ08209 521 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 DSC1Q08554 894 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SLMAPQ14BN4 828 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 FXNQ16595 210 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 HEATR6Q6AI08 1181 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF516Q92618 1163 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 ACSF2Q96CM8 615 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC51Q96ER9 411 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 HINFPQ9BQA5 517 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 TACO1Q9BSH4 297 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 NLRC4Q9NPP4 1024 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SAMSN1Q9NSI8 373 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 MAGEC2Q9UBF1 373 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 LTBP2Q14767 1821 aa8.34□□□□□ -1.07
LIMCH1-219ENST00000514096 SCN1AP35498 2009 aa8.34□□□□□ -1.08
LIMCH1-219ENST00000514096 TECTAO75443 2155 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 WDR81Q562E7 1941 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 MYO1FO00160 1098 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 CHUKO15111 745 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 MDM4O15151 490 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 BMP1P13497 986 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ACO1P21399 889 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 RPL13P26373 211 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 MAP3K7CLP57077 242 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 CYP24A1Q07973 514 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 DUSP6Q16828 381 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 WDR44Q5JSH3 913 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ANKS3Q6ZW76 656 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ARHGAP22Q7Z5H3 698 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 RNF135Q8IUD6 432 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 BRSK2Q8IWQ3 736 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 SNRNP27Q8WVK2 155 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PBXIP1Q96AQ6 731 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TSC22D3Q99576 134 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ARFGAP3Q9NP61 516 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 OLFML3Q9NRN5 406 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 WDR70Q9NW82 654 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PLK2Q9NYY3 685 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 DCNP07585 359 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF24P17028 368 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PSMC2P35998 433 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TEAD2Q15562 447 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 IER5LQ5T953 404 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms