RNA–Protein interactions for RNA: ENST00000510171.3

DDX41-211, Transcript of DEAD-box helicase 41, human

TSL 3

Gene DDX41, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-211	ENST00000510171	ALCAM	Q13740	583 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	DHCR24	Q15392	516 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	UAP1L1	Q3KQV9	507 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	TMEM92	Q6UXU6	159 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	DENND5B	Q6ZUT9	1274 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	LPCAT2	Q7L5N7	544 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	LIMS2	Q7Z4I7	341 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	MDGA1	Q8NFP4	955 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	DNAJC19	Q96DA6	116 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	ANKRD36BP1	Q96IX9	119 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	FAM84A	Q96KN4	292 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	PNKP	Q96T60	521 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	SYT15	Q9BQS2	421 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	CBWD1	Q9BRT8	395 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	PCIF1	Q9H4Z3	704 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	WASF3	Q9UPY6	502 aa		11.13	□□□□□ -0.63
DDX41-211	ENST00000510171	SDK1	Q7Z5N4	2213 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TMEM8B	A6NDV4	472 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	ZNF233	A6NK53	670 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TNFRSF10B	O14763	440 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TRIM66	O15016	1216 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	KIAA0391	O15091	583 aa	Known RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	KLF8	O95600	359 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	ABL1	P00519	1130 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TNNC2	P02585	160 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	APOD	P05090	189 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	CYP17A1	P05093	508 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TXLNA	P40222	546 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	SLC6A11	P48066	632 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	CASP5	P51878	434 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	USP46	P62068	366 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	PSMC1	P62191	440 aa	Known RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	SLC7A9	P82251	487 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	DUOXA2	Q1HG44	320 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	GAB4	Q2WGN9	574 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	HSF5	Q4G112	596 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TRIM61	Q5EBN2	209 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	EOGT	Q5NDL2	527 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	FILIP1	Q7Z7B0	1213 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	GPD1L	Q8N335	351 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	ALLC	Q8N6M5	410 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	TXNDC5	Q8NBS9	432 aa	Known RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	OLIG1	Q8TAK6	271 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	KBTBD7	Q8WVZ9	684 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	RLN3	Q8WXF3	142 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	MYLPF	Q96A32	169 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	MMS19	Q96T76	1030 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	NUSAP1	Q9BXS6	441 aa	Known RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	ADAM33	Q9BZ11	813 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	RNF38	Q9H0F5	515 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	POLM	Q9NP87	494 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	OLFML3	Q9NRN5	406 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	INTS13	Q9NVM9	706 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	EVL	Q9UI08	416 aa	Predicted RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	CPQ	Q9Y646	472 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	CLIC4	Q9Y696	253 aa		11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	MAP1B	P46821	2468 aa	Known RBP	11.12	□□□□□ -0.63
DDX41-211	ENST00000510171	PDCD11	Q14690	1871 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	NUP210	Q8TEM1	1887 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171		A0A0A0MRY4	1105 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	VPS37C	A5D8V6	355 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SGK1	O00141	431 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	PRPF6	O94906	941 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	KAT7	O95251	611 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TOP3B	O95985	862 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	HNRNPL	P14866	589 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	WARS	P23381	471 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TIE1	P35590	1138 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	GNL1	P36915	607 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	EIF2D	P41214	584 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	P2RY2	P41231	377 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	GRIA2	P42262	883 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	NOP14	P78316	857 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	BYSL	Q13895	437 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SURF1	Q15526	300 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	EMC10	Q5UCC4	262 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TDRD10	Q5VZ19	366 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	RHBDF2	Q6PJF5	856 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	CCDC73	Q6ZRK6	1079 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	HS2ST1	Q7LGA3	356 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SYT12	Q8IV01	421 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TMEFF1	Q8IYR6	380 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	PGBD3	Q8N328	593 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	IL17RC	Q8NAC3	791 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	DEFB124	Q8NES8	71 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	OR5B17	Q8NGF7	314 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	MYCBPAP	Q8TBZ2	947 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	WHAMM	Q8TF30	809 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	PCED1B	Q96HM7	432 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	INTS4	Q96HW7	963 aa	Known RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SPACA7	Q96KW9	195 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	C8orf48	Q96LL4	319 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	FNBP1	Q96RU3	617 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SCNM1	Q9BWG6	230 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TTLL2	Q9BWV7	592 aa		11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.11	□□□□□ -0.63
DDX41-211	ENST00000510171	SNX25	Q9H3E2	840 aa		11.11	□□□□□ -0.63

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