RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CES2O00748 559 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TFECO14948 347 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 GNPATO15228 680 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CFLARO15519 480 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 LPXNO60711 386 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 VPS4BO75351 444 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 HMGCRP04035 888 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 H2AFXP16104 143 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 YBX3P16989 372 aaKnown RBP eCLIP3.7□□□□□ -1.82
USP53-205ENST00000509769 SDSP20132 328 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ADD2P35612 726 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SPAM1P38567 509 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RBM34P42696 430 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 HNMTP50135 292 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 THOP1P52888 689 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MLLT6P55198 1093 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 KCNQ4P56696 695 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 AMPD2Q01433 879 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 BST2Q10589 180 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 BLMHQ13867 455 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 KRT24Q2M2I5 525 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DALRD3Q5D0E6 543 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 C12orf60Q5U649 245 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 C1orf189Q5VU69 101 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 KLHL35Q6PF15 583 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 KSR2Q6VAB6 950 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 Q6ZUG5 572 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF767PQ75MW2 155 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DYMQ7RTS9 669 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MIB1Q86YT6 1006 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MREGQ8N565 214 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 OR5T1Q8NG75 326 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TTC8Q8TAM2 541 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ATL1Q8WXF7 558 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RMDN3Q96TC7 470 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 OR2B2Q9GZK3 357 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SMYD3Q9H7B4 428 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 UNKLQ9H9P5 680 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 RNPEPL1Q9HAU8 725 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DNAAF2Q9NVR5 837 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 POLR3EQ9NVU0 708 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RNF181Q9P0P0 153 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RAB26Q9ULW5 256 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PCDHGB4Q9UN71 923 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MTMR7Q9Y216 660 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DYRK1BQ9Y463 629 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MROH5Q6ZUA9 1318 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SPDYE3A6NKU9 549 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PDE2AO00408 941 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 AKAP10O43572 662 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DFNA5O60443 496 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RPS6KA4O75676 772 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ECM2O94769 699 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 GUCA1CO95843 209 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ANXA1P04083 346 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RB1P06400 928 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RPS2P15880 293 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF3P17036 446 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ADSSP30520 456 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PLTPP55058 493 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CLCA4Q14CN2 919 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PUM3Q15397 648 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 LONRF1Q17RB8 773 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 NDUFAF6Q330K2 333 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DUS1LQ6P1R4 473 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 GALNT18Q6P9A2 607 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CCNI2Q6ZMN8 369 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 LRRC74BQ6ZQY2 392 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 KANSL1Q7Z3B3 1105 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CYP4Z1Q86W10 505 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MAPKAPK5Q8IW41 473 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 GPALPP1Q8IXQ4 340 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 HACE1Q8IYU2 909 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ALDH16A1Q8IZ83 802 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 C8orf59Q8N0T1 100 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 MPP5Q8N3R9 675 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 LCORLQ8N3X6 602 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SFRP1Q8N474 314 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TBC1D19Q8N5T2 526 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TEX19Q8NA77 164 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ATP6V1C2Q8NEY4 427 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 U2AF1L4Q8WU68 220 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 PYDC1Q8WXC3 89 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MYLPFQ96A32 169 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRIM62Q9BVG3 475 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 HERC2P3Q9BVR0 1158 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CEP41Q9BYV8 373 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TTYH1Q9H313 450 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 RNPEPQ9H4A4 650 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRIM36Q9NQ86 728 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRPM5Q9NZQ8 1165 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TMEM9Q9P0T7 183 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PSMC3IPQ9P2W1 217 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 XPR1Q9UBH6 696 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ARMCX3Q9UH62 379 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 CPDO75976 1380 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRIM43BA6NCK2 446 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 BTBD11A6QL63 1104 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TSTD3H0UI37 97 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 AP3D1O14617 1153 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms