RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ACSS3Q9H6R3 686 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ARHGEF3Q9NR81 526 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ZMYND8Q9ULU4 1186 aaPredicted RBP18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 USH1CQ9Y6N9 552 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 E7ESA3 106 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 HGSO14964 777 aaPredicted RBP18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 RBP3P10745 1247 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 VDRP11473 427 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ALDH3A1P30838 453 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 GAD2Q05329 585 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 BBS9Q3SYG4 887 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 WDR78Q5VTH9 848 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ADGRD1Q6QNK2 874 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 FAM71DQ8N9W8 422 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 OTUD5Q96G74 571 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 FGD4Q96M96 766 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 HEXIM2Q96MH2 286 aaKnown RBP18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 R3HDMLQ9H3Y0 253 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ASB7Q9H672 318 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 TXLNGQ9NUQ3 528 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 HMGXB4Q9UGU5 601 aa18.78■□□□□ 0.6
CCHCR1-228ENST00000509552 ANK1P16157 1881 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 TSHRP16473 764 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 PCK1P35558 622 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 MSH2P43246 934 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 IREB2P48200 963 aaKnown RBP18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 BASP1P80723 227 aaKnown RBP18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 SLC1A5Q15758 541 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 MSS51Q4VC12 460 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 ZC3H12AQ5D1E8 599 aaKnown RBP18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 CCDC62Q6P9F0 684 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 TAB3Q8N5C8 712 aaPredicted RBP18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 SPATA18Q8TC71 538 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 COPS5Q92905 334 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 ZBTB10Q96DT7 871 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 PAFAH2Q99487 392 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 ELP3Q9H9T3 547 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 ERAP1Q9NZ08 941 aa18.77■□□□□ 0.6
CCHCR1-228ENST00000509552 EDF1O60869 148 aaKnown RBP18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 IQCF3P0C7M6 154 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 CCNB1P14635 433 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 STIP1P31948 543 aaKnown RBP18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 MAP2K2P36507 400 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 GPD2P43304 727 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 IGBP1P78318 339 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 ROR1Q01973 937 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 RNASELQ05823 741 aaKnown RBP18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 DPYSL3Q14195 570 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 E2F5Q15329 346 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 LVRNQ6Q4G3 990 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 DLK2Q6UY11 383 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 ASRGL1Q7L266 308 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 DPH6Q7L8W6 267 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 SPOCK2Q92563 424 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 ADAM33Q9BZ11 813 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 MIS12Q9H081 205 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 YY1AP1Q9H869 796 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 VRTNQ9H8Y1 702 aa18.77■□□□□ 0.59
CCHCR1-228ENST00000509552 DCTN3O75935 186 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 ATP5HO75947 161 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 ZNF143P52747 638 aaPredicted RBP18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 YARSP54577 528 aaKnown RBP18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 POU5F1BQ06416 359 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 TTLL4Q14679 1199 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 TAF5Q15542 800 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 FAM187BQ17R55 369 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 DARS2Q6PI48 645 aaKnown RBP18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 VSIG1Q86XK7 387 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 KIF2BQ8N4N8 673 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 TBC1D31Q96DN5 1066 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 HPDLQ96IR7 371 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 SLCO1B3Q9NPD5 702 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 GRID1Q9ULK0 1009 aa18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 POLR2AP24928 1970 aaKnown RBP18.76■□□□□ 0.59
CCHCR1-228ENST00000509552 TMEM63AO94886 807 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 UNC5CO95185 931 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 C22orf31O95567 290 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 GPD1P21695 349 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 TFDP2Q14188 446 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 EFTUD2Q15029 972 aaKnown RBP eCLIP18.75■□□□□ 0.599e-9■■■■■ 28.6
CCHCR1-228ENST00000509552 FAM47CQ5HY64 1035 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 ZNF484Q5JVG2 852 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 ALKBH8Q96BT7 664 aaKnown RBP18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 THOC1Q96FV9 657 aaKnown RBP18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 LRRC37BQ96QE4 947 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 CNPY3Q9BT09 278 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 DHRS4Q9BTZ2 278 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 IFT122Q9HBG6 1241 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 DNAJC25-GNG10A0A024R161 153 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 TCRBV7S3A2A0A539 114 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 CXCL11O14625 94 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 ITGBL1O95965 494 aaPredicted RBP18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 CDH6P55285 790 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 MOGSQ13724 837 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 KYAT1Q16773 422 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 SULF1Q8IWU6 871 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 UBA3Q8TBC4 463 aa18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 DCPSQ96C86 337 aaKnown RBP18.75■□□□□ 0.59
CCHCR1-228ENST00000509552 MYLK2Q9H1R3 596 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms