RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ANP32CO43423 234 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 KRT38O76015 456 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 PRPF6O94906 941 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 F2P00734 622 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 GNAI3P08754 354 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 NBPF7P0C2Y1 421 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 UQCRFS1P1P0C7P4 283 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 UBTFL1P0CB47 393 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 PRDX5P30044 214 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 STAT3P40763 770 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 NDUFV1P49821 464 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 SCNN1BP51168 640 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 RRP1P56182 461 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 IL2P60568 153 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 WDR5P61964 334 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 ARHGAP8P85298 464 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 EXOSC9Q06265 439 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 DUSP8Q13202 625 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 ITGA7Q13683 1181 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 PLS1Q14651 629 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 MYBPC3Q14896 1274 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 TKFCQ3LXA3 575 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 EPC2Q52LR7 807 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 CRB2Q5IJ48 1285 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 N4BP2L1Q5TBK1 243 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 KIAA1841Q6NSI8 718 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 KIF18BQ86Y91 864 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 DZIP1Q86YF9 867 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 C1orf210Q8IVY1 113 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 CCDC105Q8IYK2 499 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 GPR135Q8IZ08 494 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 EFHBQ8N7U6 833 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 ANKRD44Q8N8A2 993 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 OR2W6PQ8NHA6 318 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 CHTF18Q8WVB6 975 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 ARL8AQ96BM9 186 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 MFSD3Q96ES6 412 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 KAZALD1Q96I82 304 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 HIST1H2AHQ96KK5 128 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 HIST1H2AJQ99878 128 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 MYL10Q9BUA6 226 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 SEZ6LQ9BYH1 1024 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 USP44Q9H0E7 712 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 MTG2Q9H4K7 406 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 BICC1Q9H694 974 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 GPR108Q9NPR9 543 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 TRMT13Q9NUP7 481 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 H2AFY2Q9P0M6 372 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 USP18Q9UMW8 372 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 CNPY2Q9Y2B0 182 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 GIT1Q9Y2X7 761 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 USP15Q9Y4E8 981 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 GRIN2DO15399 1336 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 SMCHD1A6NHR9 2005 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 CNOT1A5YKK6 2376 aaKnown RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 SMG1Q96Q15 3661 aaKnown RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 LOC285556D6RIA3 1793 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 IPO8O15397 1037 aaKnown RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 NCK2O43639 380 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 DUSP11O75319 330 aaKnown RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 GJB5O95377 273 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 FCER1AP12319 257 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 ACRV1P26436 265 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 COPB2P35606 906 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 RFX5P48382 616 aaPredicted RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 CLCN5P51795 746 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 USP14P54578 494 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 ANTXR2P58335 489 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 MAN2A1Q16706 1144 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 ATP2B3Q16720 1220 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 MAMDC4Q6UXC1 1216 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 UNQ6494/PRO21346Q6UXR6 183 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 CATSPERGQ6ZRH7 1159 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 ESPNLQ6ZVH7 1005 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 ABRAQ8N0Z2 381 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 BCL6BQ8N143 479 aaPredicted RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 ANKRD35Q8N283 1001 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 SUMF1Q8NBK3 374 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 EXTL1Q92935 676 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 SUCLG2Q96I99 432 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 MSLNLQ96KJ4 702 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 C12orf42Q96LP6 360 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 NOL10Q9BSC4 688 aaKnown RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 PHF7Q9BWX1 381 aaPredicted RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 PUS3Q9BZE2 481 aaKnown RBP4.66□□□□□ -1.66
USP54-217ENST00000498213 SPATC1LQ9H0A9 340 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 PCED1AQ9H1Q7 454 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 SPC25Q9HBM1 224 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 HS3ST3A1Q9Y663 406 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 MROH7-TTC4A0A0A0MT08 1334 aa4.66□□□□□ -1.66
USP54-217ENST00000498213 DOCK1Q14185 1865 aa4.65□□□□□ -1.66
USP54-217ENST00000498213 EIF4E1BA6NMX2 242 aaKnown RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 H3BNC9 293 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 CTAGE5O15320 804 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 RAB11FIP3O75154 756 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 TOX4O94842 621 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 PCDH8O95206 1070 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 EYA4O95677 639 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 SNAI1O95863 264 aaPredicted RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 IQCF3P0C7M6 154 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms