RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 FNIP2Q9P278 1114 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 MSRAQ9UJ68 235 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 MTUS1Q9ULD2 1270 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 STRIP2Q9ULQ0 834 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 SSX2IPQ9Y2D8 614 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 PCDHB5Q9Y5E4 795 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 DUSP10Q9Y6W6 482 aa12.04□□□□□ -0.48
MCF2L-231ENST00000494043 MACROD2A1Z1Q3 448 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 E5RJQ4 531 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 BEST1O76090 585 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 VNN2O95498 520 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 RRM1P23921 792 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 CYP2F1P24903 491 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 OR1D2P34982 312 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 ACADSBP45954 432 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 GSCP56915 257 aaPredicted RBP12.03□□□□□ -0.48
MCF2L-231ENST00000494043 SNX16P57768 344 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 TCEAL1Q15170 157 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 CYP4A22Q5TCH4 519 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 RNF19BQ6ZMZ0 732 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 TMEM110Q86TL2 294 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 PIGZQ86VD9 579 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 XYLT1Q86Y38 959 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 ZMIZ2Q8NF64 920 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 SPPL3Q8TCT6 385 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 SPPL2BQ8TCT7 592 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 KCTD13Q8WZ19 329 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 C18orf8Q96DM3 657 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 PGLYRP2Q96PD5 576 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 UBXN6Q9BZV1 441 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 NKX2-4Q9H2Z4 354 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 ALG13Q9NP73 1137 aaKnown RBP12.03□□□□□ -0.48
MCF2L-231ENST00000494043 MYO1AQ9UBC5 1043 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 TJP2Q9UDY2 1190 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 CNOT8Q9UFF9 292 aaKnown RBP12.03□□□□□ -0.48
MCF2L-231ENST00000494043 SALL4Q9UJQ4 1053 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 GUCA1BQ9UMX6 200 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 PLXNA4Q9HCM2 1894 aa12.03□□□□□ -0.48
MCF2L-231ENST00000494043 PTPRDP23468 1912 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 WDR27A2RRH5 827 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 HHLA1C9JL84 531 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 F8VP50 259 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TRIM66O15016 1216 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ZNF500O60304 480 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 GABBR2O75899 941 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 DNAJB1P25685 340 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 NDUFV1P49821 464 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ERVFC1P60507 584 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 RAB33AQ14088 237 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ZNF268Q14587 947 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 SMC1AQ14683 1233 aaKnown RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PPP2R2DQ66LE6 453 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TPGS2Q68CL5 300 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PLEKHA7Q6IQ23 1121 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 LLGL2Q6P1M3 1020 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 DNAJC24Q6P3W2 148 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 VSTM1Q6UX27 236 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TMC7Q7Z402 723 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 RHOT2Q8IXI1 618 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 RNF10Q8N5U6 811 aaKnown RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TTC9BQ8N6N2 239 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ATAD1Q8NBU5 361 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 C3orf20Q8ND61 904 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 SLC35G2Q8TBE7 412 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 POF1BQ8WVV4 589 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 MCRS1Q96EZ8 462 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 KCNK16Q96T55 309 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TCF25Q9BQ70 676 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 NUP85Q9BW27 656 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PRO3102Q9H379 93 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PNPLA8Q9NP80 782 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 ENTPD7Q9NQZ7 604 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TLR9Q9NR96 1032 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PARVAQ9NVD7 372 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 CTTNBP2NLQ9P2B4 639 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 WDR35Q9P2L0 1181 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 UVRAGQ9P2Y5 699 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 AFF4Q9UHB7 1163 aaKnown RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 CHORDC1Q9UHD1 332 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-231ENST00000494043 PAXBP1Q9Y5B6 917 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 IRAK3Q9Y616 596 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 SCINQ9Y6U3 715 aa12.02□□□□□ -0.49
MCF2L-231ENST00000494043 TCRBV5S1A1TA0A578 114 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 H3BNC9 293 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 PIK3R2O00459 728 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 FSCN2O14926 492 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 GRM6O15303 877 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 TEX28O15482 410 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 BUB1O43683 1085 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 MTA2O94776 668 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 ABLIM3O94929 683 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 MOCS3O95396 460 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 CXCL14O95715 111 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 HAPLN1P10915 354 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-231ENST00000494043 CA8P35219 290 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 GRIK1P39086 918 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 HADHBP55084 474 aaKnown RBP12.01□□□□□ -0.49
MCF2L-231ENST00000494043 ADCY1Q08828 1119 aa12.01□□□□□ -0.49
MCF2L-231ENST00000494043 ADIGQ0VDE8 80 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms