RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PDZD8Q8NEN9 1154 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 TSTD1Q8NFU3 115 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 RPLP0P6Q8NHW5 317 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 MYCBPAPQ8TBZ2 947 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 SH3RF2Q8TEC5 729 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 MYLPFQ96A32 169 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 SYAP1Q96A49 352 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 ELOVL4Q9GZR5 314 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 ARRDC1-AS1Q9H2J1 176 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 FAM13BQ9NYF5 915 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 TCHHQ07283 1943 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ZBTB24O43167 697 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 TACC1O75410 805 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ADH1CP00326 375 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ABL1P00519 1130 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 EGFP01133 1207 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 P4HA1P13674 534 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ARSAP15289 507 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ATICP31939 592 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 GBP1P32455 592 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 GNL1P36915 607 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 NASPP49321 788 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 AP3M2P53677 418 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 BYSLQ13895 437 aaKnown RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 DMC1Q14565 340 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 FAM26FQ5R3K3 315 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ARL14EPQ8N8R7 260 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 XXYLT1Q8NBI6 393 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 OR6B3Q8NGW1 331 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 ZC3H10Q96K80 434 aaKnown RBP12.35□□□□□ -0.43
COL6A3-213ENST00000493475 USP28Q96RU2 1077 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 IKZF4Q9H2S9 585 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 TBC1D14Q9P2M4 693 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 EBF1Q9UH73 591 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 WNT6Q9Y6F9 365 aa12.35□□□□□ -0.43
COL6A3-213ENST00000493475 K7ELQ4 463 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 CUTAO60888 179 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 RTN3O95197 1032 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 YEATS4O95619 227 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 PDGFRBP09619 1106 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 BDNFP23560 247 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 MPLP40238 635 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 DPP6P42658 865 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 RAP1GAPP47736 663 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 PXNP49023 591 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 DGKEP52429 567 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 PSMC1P62191 440 aaKnown RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 NOP14P78316 857 aaKnown RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 EML3Q32P44 896 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 WDR72Q3MJ13 1102 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 HSF5Q4G112 596 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-213ENST00000493475 DAB2IPQ5VWQ8 1189 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 BTBD8Q5XKL5 378 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 TRAPPC11Q7Z392 1133 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 CBWD2Q8IUF1 395 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 CCDC127Q96BQ5 260 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 DHX58Q96C10 678 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 TNIP3Q96KP6 325 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 SPACA7Q96KW9 195 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 C8orf48Q96LL4 319 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 HHIPQ96QV1 700 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 PKMYT1Q99640 499 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 CGRRF1Q99675 332 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 TRIM9Q9C026 710 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 NACA2Q9H009 215 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 KBTBD4Q9NVX7 518 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 SIX4Q9UIU6 781 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 EPG5Q9HCE0 2579 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 ACACBO00763 2458 aa12.34□□□□□ -0.43
COL6A3-213ENST00000493475 SCN1AP35498 2009 aa12.33□□□□□ -0.43
COL6A3-213ENST00000493475 A8MXQ7 604 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 EXOC3O60645 756 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 EIF2DP41214 584 aaKnown RBP12.33□□□□□ -0.44
COL6A3-213ENST00000493475 MRPS21P82921 87 aaKnown RBP12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CREB5Q02930 508 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 BIRC3Q13489 604 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 PSMD6Q15008 389 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 MDH1BQ5I0G3 518 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 RNF43Q68DV7 783 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 FAM173BQ6P4H8 233 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 UNC13DQ70J99 1090 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 TRMT11Q7Z4G4 463 aaKnown RBP12.33□□□□□ -0.44
COL6A3-213ENST00000493475 KBTBD6Q86V97 674 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 OSTM1Q86WC4 334 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CEP57L1Q8IYX8 460 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 RDH13Q8NBN7 331 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 LINC00301Q8NCQ3 95 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 OR5B17Q8NGF7 314 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 ZNF507Q8TCN5 953 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 OVCA2Q8WZ82 227 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CHFRQ96EP1 664 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 PCED1BQ96HM7 432 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CNTNAP3BQ96NU0 1288 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CYP2S1Q96SQ9 504 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 TTLL2Q9BWV7 592 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 CNTNAP3Q9BZ76 1288 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 POLMQ9NP87 494 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-213ENST00000493475 AGPAT3Q9NRZ7 376 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 ANGPTL2Q9UKU9 493 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms