RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 CHMP5Q9NZZ3 219 aa16.05■□□□□ 0.16
USP39-217ENST00000491659 NDRG2Q9UN36 371 aaKnown RBP16.05■□□□□ 0.16
USP39-217ENST00000491659 MTF2Q9Y483 593 aaPredicted RBP16.05■□□□□ 0.16
USP39-217ENST00000491659 GADD45BO75293 160 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 NDST1P52848 882 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 USP46P62068 366 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 FKBP3Q00688 224 aaKnown RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 ZNF268Q14587 947 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 DCAF17Q5H9S7 520 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 TCERG1LQ5VWI1 586 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 CC2D1AQ6P1N0 951 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 ACOT1Q86TX2 421 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 C1orf210Q8IVY1 113 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 USP13Q92995 863 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 EEF2KMTQ96G04 330 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 SMARCD1Q96GM5 515 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 SLITRK1Q96PX8 696 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 TTLL2Q9BWV7 592 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 DNAI2Q9GZS0 605 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 NIF3L1Q9GZT8 377 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 CYP3A43Q9HB55 503 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 DMAP1Q9NPF5 467 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 KRT82Q9NSB4 513 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 SPATA6Q9NWH7 488 aaPredicted RBP16.04■□□□□ 0.16
USP39-217ENST00000491659 MAN1B1Q9UKM7 699 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 CCL26Q9Y258 94 aa16.04■□□□□ 0.16
USP39-217ENST00000491659 TRIM49BA6NDI0 452 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 CLDN5O00501 218 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 CCNE1P24864 410 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 NBL1P41271 181 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 RPS9P46781 194 aaKnown RBP16.03■□□□□ 0.16
USP39-217ENST00000491659 PPP3CCP48454 512 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 CACNA2D1P54289 1103 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 INCA1Q0VD86 236 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 IFRD2Q12894 506 aaPredicted RBP16.03■□□□□ 0.16
USP39-217ENST00000491659 ANKRD40Q6AI12 368 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 ISM2Q6H9L7 571 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 ZC3H3Q8IXZ2 948 aaKnown RBP16.03■□□□□ 0.16
USP39-217ENST00000491659 FBXL13Q8NEE6 735 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 DHTKD1Q96HY7 919 aaPredicted RBP16.03■□□□□ 0.16
USP39-217ENST00000491659 APOBEC3GQ9HC16 384 aaKnown RBP16.03■□□□□ 0.16
USP39-217ENST00000491659 GTSE1Q9NYZ3 720 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 HMGXB4Q9UGU5 601 aa16.03■□□□□ 0.16
USP39-217ENST00000491659 C2orf78A6NCI8 922 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 SHISA7A6NL88 538 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 SPECC1L-ADORA2AF8WAN1 911 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 LAMTOR5O43504 91 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 RTN3O95197 1032 aaPredicted RBP16.02■□□□□ 0.16
USP39-217ENST00000491659 CCDC130P13994 396 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 PFKLP17858 780 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 PMS1P54277 932 aaKnown RBP16.02■□□□□ 0.16
USP39-217ENST00000491659 MCCD1P59942 119 aaPredicted RBP16.02■□□□□ 0.16
USP39-217ENST00000491659 ORC1Q13415 861 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 MTF1Q14872 753 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 RALGPS2Q86X27 583 aaPredicted RBP16.02■□□□□ 0.16
USP39-217ENST00000491659 NUP93Q8N1F7 819 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 TTC16Q8NEE8 873 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 TTC8Q8TAM2 541 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 CLDN23Q96B33 292 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 NT5C1AQ9BXI3 368 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 TMEM30AQ9NV96 361 aa16.02■□□□□ 0.16
USP39-217ENST00000491659 ARMCX3Q9UH62 379 aaPredicted RBP16.02■□□□□ 0.16
USP39-217ENST00000491659 CACNA1HO95180 2353 aa16.02■□□□□ 0.15
USP39-217ENST00000491659 AP1G2O75843 785 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 HDCP19113 662 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 CD58P19256 250 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 YWHAQP27348 245 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 CTHP32929 405 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 SOX9P48436 509 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 UBE2HP62256 183 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 TNK2Q07912 1038 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 TAF10Q12962 218 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 USP4Q13107 963 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 LRRC32Q14392 662 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 ZNF77Q15935 545 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 ITPRIPL2Q3MIP1 535 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 WDR44Q5JSH3 913 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 KLHL10Q6JEL2 608 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 ZC3H14Q6PJT7 736 aaKnown RBP16.01■□□□□ 0.15
USP39-217ENST00000491659 FRMD5Q7Z6J6 570 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 FUKQ8N0W3 1084 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 CRYBG2Q8N1P7 616 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 TTC39CQ8N584 583 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 ARL14EPQ8N8R7 260 aaPredicted RBP16.01■□□□□ 0.15
USP39-217ENST00000491659 PDZD8Q8NEN9 1154 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 SLC2A14Q8TDB8 520 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 FBXO32Q969P5 355 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 SLC22A12Q96S37 553 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 IER2Q9BTL4 223 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 GKN1Q9NS71 199 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 FAM49BQ9NUQ9 324 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 RAB20Q9NX57 234 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 GCNT4Q9P109 453 aa16.01■□□□□ 0.15
USP39-217ENST00000491659 BICDL2A1A5D9 508 aa16■□□□□ 0.15
USP39-217ENST00000491659 PROB1E7EW31 1015 aa16■□□□□ 0.15
USP39-217ENST00000491659 BIN1O00499 593 aa16■□□□□ 0.15
USP39-217ENST00000491659 ABL1P00519 1130 aa16■□□□□ 0.15
USP39-217ENST00000491659 FAM200BP0CF97 657 aa16■□□□□ 0.15
USP39-217ENST00000491659 CD44P16070 742 aaKnown RBP16■□□□□ 0.15
USP39-217ENST00000491659 IFNAR2P48551 515 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms