RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PPP1R35Q8TAP8 253 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 DENND1AQ8TEH3 1009 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 KBTBD7Q8WVZ9 684 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 ZBTB9Q96C00 473 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 NT5C1BQ96P26 610 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 SNX18Q96RF0 628 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 CAMKK2Q96RR4 588 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 RTFDC1Q9BY42 306 aaPredicted RBP3.89□□□□□ -1.79
CPSF3-205ENST00000489629 SPRTNQ9H040 489 aaPredicted RBP3.89□□□□□ -1.79
CPSF3-205ENST00000489629 SMURF2Q9HAU4 748 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 CNNM1Q9NRU3 951 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 ZNF521Q96K83 1311 aa3.89□□□□□ -1.79
CPSF3-205ENST00000489629 BCAR3O75815 825 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 PRKCBP05771 671 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 PSG6Q00889 435 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 PIN1Q13526 163 aaPredicted RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 GTF2H3Q13889 308 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 L1TD1Q5T7N2 865 aaKnown RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 CAND1Q86VP6 1230 aaKnown RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 SLC15A4Q8N697 577 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 SLC35G2Q8TBE7 412 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 STAG1Q8WVM7 1258 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 RSPRY1Q96DX4 576 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 AIFM3Q96NN9 605 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 PRR25Q96S07 402 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 ACO2Q99798 780 aaKnown RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 TMEM79Q9BSE2 394 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 ZMAT3Q9HA38 289 aaKnown RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 ATP6V0A4Q9HBG4 840 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 ANLNQ9NQW6 1124 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 TYW1Q9NV66 732 aaKnown RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 CCNL1Q9UK58 526 aaPredicted RBP3.88□□□□□ -1.79
CPSF3-205ENST00000489629 TBC1D30Q9Y2I9 924 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 WDR17Q8IZU2 1322 aa3.88□□□□□ -1.79
CPSF3-205ENST00000489629 KCNU1A8MYU2 1149 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 E5RJQ4 531 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 BTN3A1O00481 513 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 EXOC3O60645 756 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 VNN1O95497 513 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 CHRM5P08912 532 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 CYP2A6P11509 494 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 MYCLP12524 364 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 FPR3P25089 353 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 ARHGAP25P42331 645 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 RENBPP51606 427 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 AGFG1P52594 562 aaKnown RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 E2F1Q01094 437 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 SATB1Q01826 763 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 KRT17Q04695 432 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 TTF1Q15361 905 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 MGAT5BQ3V5L5 792 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 LMBRD2Q68DH5 695 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 ZNF783Q6ZMS7 281 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 DAAM2Q86T65 1068 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 COL23A1Q86Y22 540 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 BPIFB1Q8TDL5 484 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 JPH3Q8WXH2 748 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 TAAR9Q96RI9 348 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 CIPCQ9C0C6 399 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 VPS16Q9H269 839 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 NMRK2Q9NPI5 230 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 TRMT13Q9NUP7 481 aaKnown RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 ASIC5Q9NY37 505 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 TUBA8Q9NY65 449 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 ELOVL5Q9NYP7 299 aa3.87□□□□□ -1.79
CPSF3-205ENST00000489629 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.87□□□□□ -1.79
CPSF3-205ENST00000489629 E2F8A0AVK6 867 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 TMEM233B4DJY2 109 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 MYO1CO00159 1063 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 AP4M1O00189 453 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 FCHO1O14526 889 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 AKAP10O43572 662 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 TUSC2O75896 110 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 BMP15O95972 392 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 KITP10721 976 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 HSPA6P17066 643 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 NR4A2P43354 598 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 MMP13P45452 471 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 ALDH5A1P51649 535 aaPredicted RBP3.86□□□□□ -1.79
CPSF3-205ENST00000489629 LAMB3Q13751 1172 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 PTCHD3Q3KNS1 767 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 PLA1AQ53H76 456 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 DPY19L3Q6ZPD9 716 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 BCDIN3DQ7Z5W3 292 aaKnown RBP3.86□□□□□ -1.79
CPSF3-205ENST00000489629 KRT73Q86Y46 540 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 TPH2Q8IWU9 490 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 ZNF398Q8TD17 642 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 TMEM171Q8WVE6 324 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 MAML1Q92585 1016 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 PPP2R3CQ969Q6 453 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 C17orf80Q9BSJ5 609 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 DPCDQ9BVM2 203 aaPredicted RBP3.86□□□□□ -1.79
CPSF3-205ENST00000489629 MS4A7Q9GZW8 240 aaPredicted RBP3.86□□□□□ -1.79
CPSF3-205ENST00000489629 XPNPEP3Q9NQH7 507 aa3.86□□□□□ -1.79
CPSF3-205ENST00000489629 SCAF8Q9UPN6 1271 aaKnown RBP3.86□□□□□ -1.79
CPSF3-205ENST00000489629 A0A1W2PPL8 197 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 PMPCBO75439 489 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 RFPL1O75677 317 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 NTN1O95631 604 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 FGAP02671 866 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms