RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ACVR2AP27037 513 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 MAGEA10P43363 369 aaPredicted RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 COPAP53621 1224 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 ARL4CP56559 192 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 TAF12Q16514 161 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 NOMO2Q5JPE7 1267 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 BORAQ6PGQ7 559 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 CRTC1Q6UUV9 634 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 DOK3Q7L591 496 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 FAM124AQ86V42 546 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 GALNT15Q8N3T1 639 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 DNERQ8NFT8 737 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 FAM71BQ8TC56 605 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 RUBCNQ92622 972 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 NEIL1Q96FI4 390 aaPredicted RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 UBXN10Q96LJ8 280 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 TBATAQ96M53 351 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 LRRC37BQ96QE4 947 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 PPP1R9BQ96SB3 815 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 HEYLQ9NQ87 328 aaPredicted RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 NECTIN3Q9NQS3 549 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 ZSCAN32Q9NX65 697 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 SMPD4Q9NXE4 827 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 TERF2IPQ9NYB0 399 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 FAM30AQ9NZY2 134 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 ZNF69Q9UC07 566 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 OAZ3Q9UMX2 235 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 SCAF8Q9UPN6 1271 aaKnown RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 CDYLQ9Y232 598 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 LRRFIP2Q9Y608 721 aaKnown RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 DUSP10Q9Y6W6 482 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 ZFYVE9O95405 1425 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 IFT172Q9UG01 1749 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 A2ML1A8K2U0 1454 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 RALGAPBQ86X10 1494 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 NRXN1Q9ULB1 1477 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 C3P01024 1663 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 LOC102723971A0A1B0GUV8 181 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 PMS2P1A4D2B8 440 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 EIF3FO00303 357 aaPredicted RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 IPO5O00410 1097 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 NCAM2O15394 837 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 IRAK2O43187 625 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ASNA1O43681 348 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 B4GALT3O60512 393 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 INMTO95050 263 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CNOT4O95628 575 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 XRCC6P12956 609 aaKnown RBP eCLIP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 TPH1P17752 444 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 GNAT2P19087 354 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CR2P20023 1033 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CHRM3P20309 590 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 FDXRP22570 491 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 KIAA2012Q0VF49 1180 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 FOXO1Q12778 655 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ARHGEF7Q14155 803 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CSRP2Q16527 193 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 PLA1AQ53H76 456 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 SULT6B1Q6IMI4 303 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CYP26C1Q6V0L0 522 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 SLC30A10Q6XR72 485 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 RFX8Q6ZV50 586 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 KRT28Q7Z3Y7 464 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ELOA2Q8IYF1 753 aaPredicted RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 NSUN7Q8NE18 718 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 MPP4Q96JB8 637 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 SLC46A1Q96NT5 459 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 PRPF18Q99633 342 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CNPPD1Q9BV87 410 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 TLR10Q9BXR5 811 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 CPEB1Q9BZB8 566 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 PCDHAC1Q9H158 963 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 HESX1Q9UBX0 185 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ZMYND8Q9ULU4 1186 aaPredicted RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ATP11BQ9Y2G3 1177 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 PPLO60437 1756 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 TRPM1Q7Z4N2 1603 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 MADDQ8WXG6 1647 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 NLRP1Q9C000 1473 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 KDM5AP29375 1690 aaKnown RBP4.67□□□□□ -1.66
PTCD3-216ENST00000487043 NEXMIFQ5QGS0 1516 aa4.67□□□□□ -1.66
PTCD3-216ENST00000487043 ROCK2O75116 1388 aaKnown RBP4.66□□□□□ -1.66
PTCD3-216ENST00000487043 RRN3P2A6NIE6 340 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 DRGXA6NNA5 263 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 PRRT4C9JH25 899 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 POLRMTO00411 1230 aaKnown RBP4.66□□□□□ -1.66
PTCD3-216ENST00000487043 AKAP8O43823 692 aaKnown RBP4.66□□□□□ -1.66
PTCD3-216ENST00000487043 NOBOXO60393 691 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 VIPR2P41587 438 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 PTDSS1P48651 473 aaKnown RBP4.66□□□□□ -1.66
PTCD3-216ENST00000487043 CPT1AP50416 773 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 CHN2P52757 468 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 WNT3P56703 355 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 ADAM17P78536 824 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 ZXDAP98168 799 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 GRM7Q14831 915 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 IQCB1Q15051 598 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 MAPRE1Q15691 268 aaKnown RBP4.66□□□□□ -1.66
PTCD3-216ENST00000487043 CACHD1Q5VU97 1274 aa4.66□□□□□ -1.66
PTCD3-216ENST00000487043 RAP1GAP2Q684P5 730 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms