RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 MS4A14Q96JA4 679 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CEP295NLQ96MC4 621 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ACO2Q99798 780 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 REEP2Q9BRK0 252 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PLVAPQ9BX97 442 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 HAPLN2Q9GZV7 340 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 NSRP1Q9H0G5 558 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 PDZD7Q9H5P4 517 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CWH43Q9H720 699 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 UBN1Q9NPG3 1134 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PRMT7Q9NVM4 692 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 CNTN3Q9P232 1028 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SEPT9Q9UHD8 586 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 ATP11BQ9Y2G3 1177 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 R3HDM2Q9Y2K5 976 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 TTLL3Q9Y4R7 772 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PCDHA13Q9Y5I0 950 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 hCG_2014768A0A024R1R8 64 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 E9PMD0 336 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SNX3O60493 162 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 STAU1O95793 577 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 CCNB1P14635 433 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 KCNE1P15382 129 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CHN1P15882 459 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 RAD23BP54727 409 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 NPEPPSP55786 919 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 MARSP56192 900 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 PAK1Q13153 545 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 TFDP1Q14186 410 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 KRT72Q14CN4 511 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ZNF554Q86TJ5 538 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 OSTM1Q86WC4 334 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CCNJLQ8IV13 435 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PEX5LQ8IYB4 626 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 KIF2BQ8N4N8 673 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 GSTCDQ8NEC7 633 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 DNAJC9Q8WXX5 260 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SLC7A3Q8WY07 619 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 P2RX5Q93086 422 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CEP170P1Q96L14 293 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 RAB3IPQ96QF0 476 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 KRT12Q99456 494 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 KCTD10Q9H3F6 313 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CTTNBP2NLQ9P2B4 639 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 TMEM150BA6NC51 233 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 RAD51CO43502 376 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 NCK2O43639 380 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PQBP1O60828 265 aaKnown RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 PEX11AO75192 247 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 CSF2RAP15509 400 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 ZFXP17010 805 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 MMP13P45452 471 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 NPTX2P47972 431 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 ERVK-21P61565 698 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 DCAF4L1Q3SXM0 396 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 KLHDC7AQ5VTJ3 777 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 C3orf62Q6ZUJ4 267 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 DAAM2Q86T65 1068 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 CFAP61Q8NHU2 1237 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 DYDC1Q8WWB3 177 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PPP1R14BQ96C90 147 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 TMEM175Q9BSA9 504 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 IFIH1Q9BYX4 1025 aaKnown RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 ARHGEF38Q9NXL2 777 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PADI3Q9ULW8 664 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 MAGEA13PA6NCF6 341 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PJA2O43164 708 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 ASLP04424 464 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 MCF2P10911 925 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 BDNFP23560 247 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 CYP2C18P33260 490 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 GRM5P41594 1212 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 AFMP43652 599 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PHKA2P46019 1235 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 IRF2BP1Q8IU81 584 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 LRRC43Q8N309 656 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 TTC30BQ8N4P2 665 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 RNF10Q8N5U6 811 aaKnown RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 SPATA18Q8TC71 538 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 SEPT8Q92599 483 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 CALML4Q96GE6 196 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 POLR3FQ9H1D9 316 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 FAM124BQ9H5Z6 455 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 TRAF3IP3Q9Y228 551 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 COL4A3Q01955 1670 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 GJB5O95377 273 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PYGMP11217 842 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 CYP3A5P20815 502 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 DNM2P50570 870 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PARP6Q2NL67 630 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 SLC24A5Q71RS6 500 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 LONP2Q86WA8 852 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 ECHDC2Q86YB7 292 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 ANKRD13BQ86YJ7 626 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 TPH2Q8IWU9 490 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 SCUBE1Q8IWY4 988 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 RBBP8NLQ8NC74 664 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 CCDC42Q96M95 316 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 GCOM2Q9BZD3 368 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 LMAN2LQ9H0V9 348 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms