RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RANBP1P43487 201 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 NPTX2P47972 431 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 BBS9Q3SYG4 887 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 CFAP157Q5JU67 520 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 ANKRD22Q5VYY1 191 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 C15orf39Q6ZRI6 1047 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 ADGRG6Q86SQ4 1221 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 MTBPQ96DY7 904 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 C7orf26Q96N11 449 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 SH2D3AQ9BRG2 576 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 THTPAQ9BU02 230 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 UBE2OQ9C0C9 1292 aaKnown RBP13.89□□□□□ -0.19
USP40-214ENST00000483519 ZWILCHQ9H900 591 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 KMT5AQ9NQR1 393 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 ATXN10Q9UBB4 475 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 PCDHB4Q9Y5E5 795 aa13.89□□□□□ -0.19
USP40-214ENST00000483519 TMEM191CA6NGB0 347 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 TMEM191BP0C7N4 346 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 TCF4P15884 667 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 CDKN2BP42772 138 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 GAD2Q05329 585 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 HNRNPDQ14103 355 aaKnown RBP13.88□□□□□ -0.19
USP40-214ENST00000483519 ATG16L1Q676U5 607 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 AAGABQ6PD74 315 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 KYAT3Q6YP21 454 aaKnown RBP13.88□□□□□ -0.19
USP40-214ENST00000483519 SERAC1Q96JX3 654 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 KIFC3Q9BVG8 833 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 SLC7A8Q9UHI5 535 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 SBF1O95248 1867 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 COPEO14579 308 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 CFHP08603 1231 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 PYGBP11216 843 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 RPL7AP62424 266 aaKnown RBP13.88□□□□□ -0.19
USP40-214ENST00000483519 ZNF200P98182 395 aaPredicted RBP13.88□□□□□ -0.19
USP40-214ENST00000483519 CDK18Q07002 472 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 LSAMPQ13449 338 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 NIPA1Q7RTP0 329 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 TREML1Q86YW5 311 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 C4orf19Q8IY42 314 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 TTC13Q8NBP0 860 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 RSAD2Q8WXG1 361 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 WDR83Q9BRX9 315 aaKnown RBP13.88□□□□□ -0.19
USP40-214ENST00000483519 C1orf21Q9H246 121 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 ZDHHC7Q9NXF8 308 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 ZNRF3Q9ULT6 936 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 TBC1D30Q9Y2I9 924 aa13.88□□□□□ -0.19
USP40-214ENST00000483519 DICER1Q9UPY3 1922 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 HNRNPDLO14979 420 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 DHX15O43143 795 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 PENKP01210 267 aaPredicted RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 HLA-DRAP01903 254 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 CALB1P05937 261 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PYGLP06737 847 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 ACO1P21399 889 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 GARTP22102 1010 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PSMC5P62195 406 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 KDSRQ06136 332 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 CUL2Q13617 745 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 DOK7Q18PE1 504 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 XKR9Q5GH70 373 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 SLC39A4Q6P5W5 647 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 TMEM270Q6UE05 265 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PRPF39Q86UA1 669 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 OR6Y1Q8NGX8 325 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 CHURC1Q8WUH1 139 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 SLC44A1Q8WWI5 657 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 FAM213AQ9BRX8 229 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 XPO7Q9UIA9 1087 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 TMCO1Q9UM00 188 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 AGTPBP1Q9UPW5 1226 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 IRF6O14896 467 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 SPAG6O75602 509 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PABPC4LP0CB38 370 aaKnown RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 RBM5P52756 815 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP40-214ENST00000483519 MAP7Q14244 749 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PIGHQ14442 188 aaPredicted RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 DNAJC24Q6P3W2 148 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 DCUN1D2Q6PH85 259 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 TSHZ1Q6ZSZ6 1077 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 MCEEQ96PE7 176 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 PPM1HQ9ULR3 514 aa13.87□□□□□ -0.19
USP40-214ENST00000483519 ASTN2O75129 1339 aaPredicted RBP13.87□□□□□ -0.19
USP40-214ENST00000483519 TMEM150BA6NC51 233 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 E5RJQ4 531 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 OPHN1O60890 802 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 RNASEH1O60930 286 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 MMP8P22894 467 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 FAAP100Q0VG06 881 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ASPHQ12797 758 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 MED21Q13503 144 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ZACNQ401N2 412 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 SH2D5Q6ZV89 423 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 LCA5Q86VQ0 697 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 RASSF3Q86WH2 238 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 FBXO27Q8NI29 283 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 SPIRE2Q8WWL2 714 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 CLPTM1LQ96KA5 538 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 SRPK1Q96SB4 655 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 AGO4Q9HCK5 861 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 ANKEF1Q9NU02 776 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms