RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	MAPK13	O15264	365 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SIGLEC6	O43699	453 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	AP1G1	O43747	822 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	NOBOX	O60393	691 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ATP2C2	O75185	946 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PEX11A	O75192	247 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	CSDE1	O75534	798 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ASMTL	O95671	621 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	FGFR1OP	O95684	399 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PF4	P02776	101 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	KRT16	P08779	473 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SRGN	P10124	158 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	FDPS	P14324	419 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ALOX15	P16050	662 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	NAT1	P18440	290 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	MARK3	P27448	753 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	TCF7	P36402	384 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PTDSS1	P48651	473 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	RCAN1	P53805	252 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PMS2	P54278	862 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	BPIFB4	P59827	614 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAGOH	P61326	146 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	KCNJ2	P63252	427 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	RNF4	P78317	190 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	HTRA3	P83110	453 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	FOXO4	P98177	505 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	MVK	Q03426	396 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	UBXN1	Q04323	297 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SLC34A1	Q06495	639 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PAK1	Q13153	545 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	KCNJ12	Q14500	433 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	HLTF	Q14527	1009 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SPCS2	Q15005	226 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PPP2R5B	Q15173	497 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC14	Q49A88	953 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF658	Q5TYW1	1059 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	RNF220	Q5VTB9	566 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	WDR78	Q5VTH9	848 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	MFSD5	Q6N075	450 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	NEPRO	Q6NW34	567 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	BORA	Q6PGQ7	559 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	C16orf87	Q6PH81	154 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	FOXR2	Q6PJQ5	311 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	B3GNT6	Q6ZMB0	384 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PPP1R21	Q6ZMI0	780 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	INTS8	Q75QN2	995 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ADGRG6	Q86SQ4	1221 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	EXOC3L1	Q86VI1	746 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	DZIP1	Q86YF9	867 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SPATA5	Q8NB90	893 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	DDI1	Q8WTU0	396 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAGOHB	Q96A72	148 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	CDK5RAP3	Q96JB5	506 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	UIMC1	Q96RL1	719 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ERGIC2	Q96RQ1	377 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF184	Q99676	751 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	ELAC2	Q9BQ52	826 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SPZ1	Q9BXG8	430 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	IFIH1	Q9BYX4	1025 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	NYX	Q9GZU5	481 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	DPH5	Q9H2P9	285 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	FOXP1	Q9H334	677 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SYNC	Q9H7C4	482 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMEM165	Q9HC07	324 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	STX18	Q9P2W9	335 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PRKAG3	Q9UGI9	489 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	SEC63	Q9UGP8	760 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	CARD8	Q9Y2G2	431 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	UTP11	Q9Y3A2	253 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520	PMF1-BGLAP	U3KQ54	211 aa		4.99	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A087WWV3	80 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TTC26	A0AVF1	554 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SH3D21	A4FU49	640 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TRIM43B	A6NCK2	446 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SIGLEC16	A6NMB1	481 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520		F8W8V4	182 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	GOLGA8T	H3BQL2	631 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	MEIS1	O00470	390 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	RGS16	O15492	202 aa	Predicted RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	IDH3B	O43837	385 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SRGAP2	O75044	1071 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ATP9A	O75110	1047 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	STK10	O94804	968 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF205	O95201	554 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ALDH2	P05091	517 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ATP5B	P06576	529 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PDHA1	P08559	390 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CYP21A2	P08686	494 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC159	P0C7I6	412 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	GOLGA8H	P0CJ92	632 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	GYS1	P13807	737 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	VAV1	P15498	845 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CHN1	P15882	459 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF12	P17014	697 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	HSPA6	P17066	643 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PTPN2	P17706	415 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PTPN4	P29074	926 aa		4.98	□□□□□ -1.61

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