RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PCDHA1Q9Y5I3 950 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 CNOT3O75175 753 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 UNC5CO95185 931 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 GNAI2P04899 355 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 TMEM191BP0C7N4 346 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 CYP19A1P11511 503 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 ADORA2AP29274 412 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 E2F1Q01094 437 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 CFHR1Q03591 330 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 ZNF268Q14587 947 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 IQCB1Q15051 598 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 CERKLQ49MI3 558 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 UBAP2Q5T6F2 1119 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 ZNF280BQ86YH2 543 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 CPA6Q8N4T0 437 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 MAP4K1Q92918 833 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 LYZL4Q96KX0 146 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 SIGLEC11Q96RL6 698 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 PRR25Q96S07 402 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 MMS19Q96T76 1030 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 HEY2Q9UBP5 337 aa4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 FEZ2Q9UHY8 353 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-212ENST00000474059 TLR2O60603 784 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 ARIH2O95376 493 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 FGF2P09038 288 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 MYO1EQ12965 1108 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 DEPDC1Q5TB30 811 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 DEF8Q6ZN54 512 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 WIPF2Q8TF74 440 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 TMEM184CQ9NVA4 438 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 SNX14Q9Y5W7 946 aa4.31□□□□□ -1.72
CCDC88A-212ENST00000474059 SHTN1A0MZ66 631 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 FAM90A8PA6NJQ4 464 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 UBE2Q2LH0YL09 131 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 DSCR3O14972 297 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 SLC16A6O15403 523 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 FAM90A13PP0C7W8 464 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 FAM90A24PP0C7X0 464 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 PSG1P11464 419 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 TNFRSF1BP20333 461 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 VIPR2P41587 438 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 NKX6-1P78426 367 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 TBC1D25Q3MII6 688 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 MTHFD1LQ6UB35 978 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 SERPINA13PQ6UXR4 307 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 CTAGE1Q96RT6 745 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 ZBTB40Q9NUA8 1239 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 LMBRD1Q9NUN5 540 aa4.3□□□□□ -1.72
CCDC88A-212ENST00000474059 ZMYM2Q9UBW7 1377 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 TNKSO95271 1327 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 AP4M1O00189 453 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 PDE6CP51160 858 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 GHRHRQ02643 423 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 E2F2Q14209 437 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 PLS1Q14651 629 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 EFCAB2Q5VUJ9 269 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 KRTAP5-4Q6L8H1 288 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 LAYNQ6UX15 382 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 ABRAQ8N0Z2 381 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 LINC01465Q8N7H1 131 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 PCSK9Q8NBP7 692 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 ADAMTS18Q8TE60 1221 aa4.29□□□□□ -1.72
CCDC88A-212ENST00000474059 FGAP02671 866 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 FTLP02792 175 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 APEHP13798 732 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 ATF7P17544 494 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 PDCP20941 246 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 SCP2P22307 547 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 SOX8P57073 446 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 SEMA3AQ14563 771 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 CAND1Q86VP6 1230 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 MESP1Q9BRJ9 268 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 SLC13A1Q9BZW2 595 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 PNPOQ9NVS9 261 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 XPR1Q9UBH6 696 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 MCM8Q9UJA3 840 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 CCNL1Q9UK58 526 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 PROCRQ9UNN8 238 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 ATP8A1Q9Y2Q0 1164 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 PLEKHM1Q9Y4G2 1056 aa4.28□□□□□ -1.72
CCDC88A-212ENST00000474059 TTC3P53804 2025 aa4.28□□□□□ -1.73
CCDC88A-212ENST00000474059 BTBD19C9JJ37 291 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 TMEM232C9JQI7 657 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 GRPP07492 148 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 ZNF91Q05481 1191 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 IZUMO1Q8IYV9 350 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 OSR1Q8TAX0 266 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 OSCP1Q8WVF1 389 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 HIPK2Q9H2X6 1198 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 LPAR3Q9UBY5 353 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 MRFAP1Q9Y605 127 aa4.27□□□□□ -1.73
CCDC88A-212ENST00000474059 KATNA1O75449 491 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CRYABP02511 175 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 DLDP09622 509 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 MYCLP12524 364 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 KCNA3P22001 575 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 KCNJ5P48544 419 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CDKN1CP49918 316 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 DGKEP52429 567 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms