RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SLC24A5Q71RS6 500 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 INTS8Q75QN2 995 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 TMCO2Q7Z6W1 182 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 MRPL10Q7Z7H8 261 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 ECHDC2Q86YB7 292 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 SEPT8Q92599 483 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 ELMO3Q96BJ8 720 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 CCDC51Q96ER9 411 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 PLPPR2Q96GM1 343 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 ACAP3Q96P50 834 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM6Q9C030 488 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 XPO4Q9C0E2 1151 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 NDST4Q9H3R1 872 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 METTL14Q9HCE5 456 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 KIAA1586Q9HCI6 787 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 POLR3KQ9Y2Y1 108 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 LAMA3Q16787 3333 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 RANBP2P49792 3224 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 SCN5AQ14524 2016 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 SMIM28A0A1B0GU29 152 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 LGALS16A8MUM7 142 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 B4GALT3O60512 393 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 WISP1O95388 367 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 SERPINC1P01008 464 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 C4BPAP04003 597 aaKnown RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 FGFR1P11362 822 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 IGFBP6P24592 240 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 RFC2P35250 354 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 GRIK1P39086 918 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 PBX1P40424 430 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 MLH1P40692 756 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 GCLMP48507 274 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 KLK7P49862 253 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 GATMP50440 423 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 ZNF75DP51815 510 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 GUCY2FP51841 1108 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 UBASH3AP57075 661 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 DEFB103AP81534 67 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 SOX4Q06945 474 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 NAB2Q15742 525 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 MAN2A1Q16706 1144 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 XKR4Q5GH76 650 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CLLU1OSQ5K130 101 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 JADE1Q6IE81 842 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 DPY19L2P1Q6NXN4 242 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CNKSR3Q6P9H4 555 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 C15orf39Q6ZRI6 1047 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 OTOP2Q7RTS6 562 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 FAM114A1Q8IWE2 563 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 TMEM199Q8N511 208 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 RBBP8NLQ8NC74 664 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 RNF169Q8NCN4 708 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CXorf38Q8TB03 319 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 DPF3Q92784 378 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 APBB2Q92870 758 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 SHDQ96IW2 340 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 SNX27Q96L92 541 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 GAD1Q99259 594 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 HTATIP2Q9BUP3 242 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CCDC94Q9BW85 323 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 FTHL17Q9BXU8 183 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CEP41Q9BYV8 373 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM5Q9C035 493 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 MTMR12Q9C0I1 747 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 TMEM117Q9H0C3 514 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 MMRN2Q9H8L6 949 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 RPF1Q9H9Y2 349 aaKnown RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 MAGEC2Q9UBF1 373 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-208ENST00000470268 STOML1Q9UBI4 398 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 CACNG4Q9UBN1 327 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 PYCARDQ9ULZ3 195 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 TET1Q8NFU7 2136 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 TANC1Q9C0D5 1861 aa5.09□□□□□ -1.59
SF3B1-208ENST00000470268 ARL5CA6NH57 179 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 EPHB6O15197 1021 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 OFD1O75665 1012 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ALX3O95076 343 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 VNN1O95497 513 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CST3P01034 146 aaPredicted RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 AFPP02771 609 aaKnown RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ITGA4P13612 1032 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 KRT13P13646 458 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TNNI1P19237 187 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 FMO5P49326 533 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 RAB27AP51159 221 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 SCNN1GP51170 649 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 GP2P55259 537 aaKnown RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 WDR5P61964 334 aaKnown RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TPM4P67936 248 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 POU5F1Q01860 360 aaKnown RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CLCQ05315 142 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 GOLGA8FQ08AF8 430 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 GOLGA8DPQ0D2H9 430 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ZBTB6Q15916 424 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ZACNQ401N2 412 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TMEM240Q5SV17 173 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TDRD10Q5VZ19 366 aaKnown RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ZNF365Q70YC5 407 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms