RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 NXF3Q9H4D5 531 aaKnown RBP8□□□□□ -1.13
COL6A3-208ENST00000468792 PCDH9Q9HC56 1237 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 TUBGCP4Q9UGJ1 667 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 USTQ9Y2C2 406 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 R3HDM2Q9Y2K5 976 aaKnown RBP8□□□□□ -1.13
COL6A3-208ENST00000468792 GIT1Q9Y2X7 761 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 TRIP11Q15643 1979 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 SCN1AP35498 2009 aa8□□□□□ -1.13
COL6A3-208ENST00000468792 APOC4-APOC2K7ER74 178 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 MDM4O15151 490 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 INPPL1O15357 1258 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 RIPK2O43353 540 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ZNF189O75820 626 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 GJB6O95452 261 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 GNRH1P01148 92 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 APOC2P02655 101 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ABHD2P08910 425 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 C6orf222P0C671 652 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 SKIP12755 728 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 NR1D1P20393 614 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 MIPP30301 263 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 STIP1P31948 543 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 SSTR3P32745 418 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 PSMC4P43686 418 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 LMAN1P49257 510 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 RAB27AP51159 221 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 GYS2P54840 703 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 LILRA4P59901 499 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 BEX3Q00994 111 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TMEM62Q0P6H9 643 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 BST2Q10589 180 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 NOGQ13253 232 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TFDP2Q14188 446 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 MORF4L2Q15014 288 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 GOLGA7BQ2TAP0 167 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 NBPF20Q3BBV1 942 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 FAM47CQ5HY64 1035 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 FAM26DQ5JW98 314 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 PPP1R26Q5T8A7 1209 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 FAM102AQ5T9C2 384 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 HIBCHQ6NVY1 386 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 LEKR1Q6ZMV7 388 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 SLC26A9Q7LBE3 791 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ANKS1BQ7Z6G8 1248 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TTC30AQ86WT1 665 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 MAP7D3Q8IWC1 876 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ZCCHC9Q8N567 271 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 PCSK9Q8NBP7 692 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 APPL2Q8NEU8 664 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 KCTD13Q8WZ19 329 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TRIB2Q92519 343 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 KHSRPQ92945 711 aaKnown RBP eCLIP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 C18orf25Q96B23 403 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 CENPTQ96BT3 561 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 HNRNPABQ99729 332 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 C11orf84Q9BUA3 381 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 HEMGNQ9BXL5 484 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 CAPS2Q9BXY5 557 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 SEZ6LQ9BYH1 1024 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TRIM31Q9BZY9 425 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 PLEKHA4Q9H4M7 779 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 CNOT10Q9H9A5 744 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 PPCSQ9HAB8 311 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 UBN1Q9NPG3 1134 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 AAASQ9NRG9 546 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 METTL5Q9NRN9 209 aaKnown RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ASIC3Q9UHC3 531 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ANAPC5Q9UJX4 755 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 USP18Q9UMW8 372 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 SHOC2Q9UQ13 582 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 GINS2Q9Y248 185 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 ATP8A1Q9Y2Q0 1164 aa7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TRIP12Q14669 1992 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-208ENST00000468792 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 LRRD1A4D1F6 860 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 TMEM88BA6NKF7 163 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 A8MXQ7 604 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 E5RJQ4 531 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 GOLGA8SH3BPF8 625 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 DNALI1O14645 258 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 PTGESO14684 152 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 PPEF2O14830 753 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 XPO1O14980 1071 aaKnown RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 EIF3HO15372 352 aaKnown RBP eCLIP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 PAPSS1O43252 624 aaPredicted RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 HUS1O60921 280 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 TTC4O95801 387 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 AGTP01019 485 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 TCF4P15884 667 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 PDGFRAP16234 1089 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 TSHRP16473 764 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 AKAP5P24588 427 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 IL1R2P27930 398 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 SDC4P31431 198 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 RDXP35241 583 aaKnown RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 ADCY8P40145 1251 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 SSR1P43307 286 aaKnown RBP7.98□□□□□ -1.13
COL6A3-208ENST00000468792 LHX1P48742 406 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 FLT3LGP49771 235 aa7.98□□□□□ -1.13
COL6A3-208ENST00000468792 IRAK1P51617 712 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms