RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLC8A2Q9UPR5 921 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 CTNND2Q9UQB3 1225 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 PI4KAP42356 2102 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 BICDL2A1A5D9 508 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 EIF4E1BA6NMX2 242 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TULP1O00294 542 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 KHNYNO15037 678 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 CETN3O15182 167 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 ATG13O75143 517 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TYMPP19971 482 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 GUCY2FP51841 1108 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 NLRP12P59046 1061 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 LILRA4P59901 499 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TFAMQ00059 246 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 FKBP3Q00688 224 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 YWHAHQ04917 246 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 COL28A1Q2UY09 1125 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 IQCEQ6IPM2 695 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TTI2Q6NXR4 508 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 PKN3Q6P5Z2 889 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 DSTYKQ6XUX3 929 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 USP37Q86T82 979 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 HS6ST3Q8IZP7 471 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 ELMOD1Q8N336 334 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TMEM130Q8N3G9 435 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 DEFB124Q8NES8 71 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 CACTINQ8WUQ7 758 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 CCDC127Q96BQ5 260 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 ZNF512Q96ME7 567 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 BBC3Q96PG8 261 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 FNBP1Q96RU3 617 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 CGRRF1Q99675 332 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 CYP4F11Q9HBI6 524 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 INTS13Q9NVM9 706 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 DPP3Q9NY33 737 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 TMEM63CQ9P1W3 806 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 AFF4Q9UHB7 1163 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 PTPRJQ12913 1337 aa12.76□□□□□ -0.37
SQSTM1-206ENST00000466342 ANO9A1A5B4 782 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 OR6C75A6NL08 312 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 PIRO00625 290 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 SEC24AO95486 1093 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 TMEM191BP0C7N4 346 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 DLATP10515 647 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 MYL4P12829 197 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 GJA1P17302 382 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 PSMC2P35998 433 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 DPCR1Q3MIW9 517 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 C9orf57Q5W0N0 161 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 CAVIN1Q6NZI2 390 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 INTS8Q75QN2 995 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 FAM186BQ8IYM0 893 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 C1orf127Q8N9H9 656 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 LEMD2Q8NC56 503 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 TTC8Q8TAM2 541 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 TMC2Q8TDI7 906 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 PARD3BQ8TEW8 1205 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 SYAP1Q96A49 352 aaPredicted RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 RSPRY1Q96DX4 576 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 EEF2KMTQ96G04 330 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 ANKRD36BP1Q96IX9 119 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 MTMR12Q9C0I1 747 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 GZF1Q9H116 711 aaPredicted RBP12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 SLC32A1Q9H598 525 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 GTSE1Q9NYZ3 720 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 DACH1Q9UI36 760 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 ITGA11Q9UKX5 1188 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 INSL5Q9Y5Q6 135 aa12.75□□□□□ -0.37
SQSTM1-206ENST00000466342 H0Y626 953 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 PPEF2O14830 753 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 SLC16A3O15427 465 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 TRIM16O95361 564 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 TNNC2P02585 160 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 ITGB3P05106 788 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 EPB41P11171 864 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 ODC1P11926 461 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 CPB1P15086 417 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 TNNI1P19237 187 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 RDXP35241 583 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 VAMP7P51809 220 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 EPHA5P54756 1037 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 CLDN10P78369 228 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 ENPEPQ07075 957 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 BFSP1Q12934 665 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 GPR17Q13304 367 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 TEAD2Q15562 447 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 DUOXA2Q1HG44 320 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 UAP1L1Q3KQV9 507 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 ARHGAP29Q52LW3 1261 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 LMBRD2Q68DH5 695 aaPredicted RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 RNF19BQ6ZMZ0 732 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 OR5B17Q8NGF7 314 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 PLEKHO2Q8TD55 490 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 FAM84AQ96KN4 292 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 SENP8Q96LD8 212 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 CEP63Q96MT8 703 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 DUSP9Q99956 384 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 CEP72Q9P209 647 aa12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 RWDD2AQ9UIY3 292 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms